RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 OR7C2O60412 319 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 RAB3DO95716 219 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 CELA2BP08218 269 aaPredicted RBP3.56□□□□□ -1.84
USH2A-202ENST00000366942 LAMP1P11279 417 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 GABRB3P28472 473 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 AKR1C3P42330 323 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 CAMLGP49069 296 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 NKX2-5P52952 324 aaPredicted RBP3.56□□□□□ -1.84
USH2A-202ENST00000366942 FAM27E3Q08E93 113 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 MESP2Q0VG99 397 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 EBPQ15125 230 aaKnown RBP3.56□□□□□ -1.84
USH2A-202ENST00000366942 DHRS4L2Q6PKH6 230 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 SSX7Q7RTT5 188 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 ODF3L1Q8IXM7 274 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 OR5A2Q8NGI9 324 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 HMGCLL1Q8TB92 370 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 C10orf35Q96D05 121 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 SSX3Q99909 188 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 ZNF436Q9C0F3 470 aaPredicted RBP3.56□□□□□ -1.84
USH2A-202ENST00000366942 A0A087WUJ7 227 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 A0A1W2PQM1 296 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 C17orf100A8MU93 164 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 ZNF727A8MUV8 499 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 RAB3BP20337 219 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 Q0VFX4 171 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 SQSTM1Q13501 440 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 RAB6CQ53S08 254 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 DEGS2Q6QHC5 323 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 IGF2-ASQ6U949 168 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 C1orf229Q6ZS94 237 aaPredicted RBP3.55□□□□□ -1.84
USH2A-202ENST00000366942 CYS1Q717R9 158 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 ADGRE4PQ86SQ3 457 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 ZFP62Q8NB50 900 aaPredicted RBP3.55□□□□□ -1.84
USH2A-202ENST00000366942 OR2A1Q8NGT9 310 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 STON2Q8WXE9 905 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 VOPP1Q96AW1 172 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 ZNF488Q96MN9 340 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 ALKBH7Q9BT30 221 aaPredicted RBP3.55□□□□□ -1.84
USH2A-202ENST00000366942 GABARAPL1Q9H0R8 117 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 KPTNQ9Y664 436 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 TSTD3H0UI37 97 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 PYCARD-AS1I3L0S3 204 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 SLC2A10O95528 541 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 OSMP13725 252 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 CDKN2AP42771 156 aaKnown RBP3.55□□□□□ -1.84
USH2A-202ENST00000366942 RPL15P61313 204 aaKnown RBP3.55□□□□□ -1.84
USH2A-202ENST00000366942 LYZP61626 148 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 MEP1BQ16820 701 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 ATP1A1-AS1Q5TC04 95 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 CPOQ8IVL8 374 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 EXOSC3Q9NQT5 275 aaKnown RBP3.55□□□□□ -1.84
USH2A-202ENST00000366942 RPRMQ9NS64 109 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 OTOGLQ3ZCN5 2332 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 IGHV3-64DA0A0J9YX35 117 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 UPK1AO00322 258 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 RAB29O14966 203 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 SBK3P0C264 359 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 CDX1P47902 265 aaPredicted RBP3.55□□□□□ -1.84
USH2A-202ENST00000366942 PAX5Q02548 391 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 C3orf36Q3SXR2 165 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 ZNF841Q6ZN19 808 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 SH2D6Q7Z4S9 175 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 LRRTM1Q86UE6 522 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 PPP1R27Q86WC6 154 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 TMEM52Q8NDY8 209 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 MITD1Q8WV92 249 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 ZNF331Q9NQX6 463 aaPredicted RBP3.55□□□□□ -1.84
USH2A-202ENST00000366942 ZNF230Q9UIE0 474 aaPredicted RBP3.55□□□□□ -1.84
USH2A-202ENST00000366942 ETV7Q9Y603 341 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 IFT172Q9UG01 1749 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 FAM72CH0Y354 149 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 OVOL1O14753 267 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 OR2F2O95006 317 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 UCP1P25874 307 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 RBMS2Q15434 407 aaKnown RBP3.55□□□□□ -1.84
USH2A-202ENST00000366942 RGNQ15493 299 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 Q3ZCU0 254 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 TMEM97Q5BJF2 176 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 FAM72AQ5TYM5 149 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 FAM72DQ6L9T8 149 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 IGFL3Q6UXB1 125 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 ZNF367Q7RTV3 350 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 FAM72BQ86X60 149 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 SLC38A9Q8NBW4 561 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 OR2G2Q8NGZ5 317 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 C10orf82Q8WW14 230 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 UBQLN3Q9H347 655 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 METTL1Q9UBP6 276 aaKnown RBP3.55□□□□□ -1.84
USH2A-202ENST00000366942 ZNF281Q9Y2X9 895 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 USP54Q70EL1 1684 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 XRCC3O43542 346 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 KLK8O60259 260 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 GPX3P22352 226 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 PRKACGP22612 351 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 PRDX2P32119 198 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 PTGER1P34995 402 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 ZNF85Q03923 595 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 RAB32Q13637 225 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 PGGHGQ32M88 737 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 FAM159AQ6UWV7 190 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms