RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 CD2P06729 351 aa14.87□□□□□ -0.03
CLN3-202ENST00000355477 MTNR1BP49286 362 aa14.87□□□□□ -0.03
CLN3-202ENST00000355477 RAB13P51153 203 aa14.87□□□□□ -0.03
CLN3-202ENST00000355477 RPS11P62280 158 aaKnown RBP eCLIP14.87□□□□□ -0.03
CLN3-202ENST00000355477 DOC2BQ14184 412 aa14.87□□□□□ -0.03
CLN3-202ENST00000355477 PLA1AQ53H76 456 aa14.87□□□□□ -0.03
CLN3-202ENST00000355477 ELP2Q6IA86 826 aa14.87□□□□□ -0.03
CLN3-202ENST00000355477 BAIAP2L2Q6UXY1 529 aa14.87□□□□□ -0.03
CLN3-202ENST00000355477 ASCL4Q6XD76 172 aa14.87□□□□□ -0.03
CLN3-202ENST00000355477 PXT1Q8NFP0 134 aa14.87□□□□□ -0.03
CLN3-202ENST00000355477 OR10K1Q8NGX5 313 aa14.87□□□□□ -0.03
CLN3-202ENST00000355477 TNFAIP8L1Q8WVP5 186 aa14.87□□□□□ -0.03
CLN3-202ENST00000355477 COQ2Q96H96 371 aa14.87□□□□□ -0.03
CLN3-202ENST00000355477 NR1H4Q96RI1 486 aaPredicted RBP14.87□□□□□ -0.03
CLN3-202ENST00000355477 GPER1Q99527 375 aa14.87□□□□□ -0.03
CLN3-202ENST00000355477 CHCHD3Q9NX63 227 aaKnown RBP14.87□□□□□ -0.03
CLN3-202ENST00000355477 PSORS1C1Q9UIG5 152 aa14.87□□□□□ -0.03
CLN3-202ENST00000355477 TBL2Q9Y4P3 447 aaKnown RBP14.87□□□□□ -0.03
CLN3-202ENST00000355477 SESN1Q9Y6P5 492 aa14.87□□□□□ -0.03
CLN3-202ENST00000355477 EFCAB10A6NFE3 127 aa14.86□□□□□ -0.03
CLN3-202ENST00000355477 ALDOBP05062 364 aa14.86□□□□□ -0.03
CLN3-202ENST00000355477 C21orf33P30042 268 aaPredicted RBP14.86□□□□□ -0.03
CLN3-202ENST00000355477 OR3A4PP47883 348 aa14.86□□□□□ -0.03
CLN3-202ENST00000355477 DYNC1I2Q13409 638 aaKnown RBP14.86□□□□□ -0.03
CLN3-202ENST00000355477 SSX2Q16385 188 aa14.86□□□□□ -0.03
CLN3-202ENST00000355477 BRICD5Q6PL45 260 aa14.86□□□□□ -0.03
CLN3-202ENST00000355477 CHST4Q8NCG5 386 aa14.86□□□□□ -0.03
CLN3-202ENST00000355477 CORO2AQ92828 525 aa14.86□□□□□ -0.03
CLN3-202ENST00000355477 MALSU1Q96EH3 234 aa14.86□□□□□ -0.03
CLN3-202ENST00000355477 PGLYRP3Q96LB9 341 aa14.86□□□□□ -0.03
CLN3-202ENST00000355477 TMEM133Q9H2Q1 129 aa14.86□□□□□ -0.03
CLN3-202ENST00000355477 DCLRE1BQ9H816 532 aa14.86□□□□□ -0.03
CLN3-202ENST00000355477 PLCXD1Q9NUJ7 323 aa14.86□□□□□ -0.03
CLN3-202ENST00000355477 ING3Q9NXR8 418 aa14.86□□□□□ -0.03
CLN3-202ENST00000355477 NOTCH1P46531 2555 aa14.86□□□□□ -0.03
CLN3-202ENST00000355477 TRGV10A0A0A0MS01 117 aa14.85□□□□□ -0.03
CLN3-202ENST00000355477 IGHV2-26A0A0B4J1V2 119 aa14.85□□□□□ -0.03
CLN3-202ENST00000355477 TRAV24A0A0B4J272 114 aa14.85□□□□□ -0.03
CLN3-202ENST00000355477 TRBV5-5A0A0J9YX44 114 aa14.85□□□□□ -0.03
CLN3-202ENST00000355477 VGLL3A8MV65 326 aa14.85□□□□□ -0.03
CLN3-202ENST00000355477 H0YJX3 145 aa14.85□□□□□ -0.03
CLN3-202ENST00000355477 CHST1O43916 411 aa14.85□□□□□ -0.03
CLN3-202ENST00000355477 CDRT1O95170 752 aa14.85□□□□□ -0.03
CLN3-202ENST00000355477 CSN2P05814 226 aa14.85□□□□□ -0.03
CLN3-202ENST00000355477 JUNBP17275 347 aaPredicted RBP14.85□□□□□ -0.03
CLN3-202ENST00000355477 IGFBP3P17936 291 aaPredicted RBP14.85□□□□□ -0.03
CLN3-202ENST00000355477 GDNFP39905 211 aa14.85□□□□□ -0.03
CLN3-202ENST00000355477 PTGFRP43088 359 aa14.85□□□□□ -0.03
CLN3-202ENST00000355477 MED21Q13503 144 aa14.85□□□□□ -0.03
CLN3-202ENST00000355477 ATXN7L3Q14CW9 347 aaPredicted RBP14.85□□□□□ -0.03
CLN3-202ENST00000355477 KRBOX4Q5JUW0 171 aa14.85□□□□□ -0.03
CLN3-202ENST00000355477 PRAMEF5Q5TYX0 476 aa14.85□□□□□ -0.03
CLN3-202ENST00000355477 AHSA2Q719I0 299 aa14.85□□□□□ -0.03
CLN3-202ENST00000355477 Q8NFD4 153 aa14.85□□□□□ -0.03
CLN3-202ENST00000355477 BPIFB6Q8NFQ5 453 aa14.85□□□□□ -0.03
CLN3-202ENST00000355477 OR51T1Q8NGJ9 327 aa14.85□□□□□ -0.03
CLN3-202ENST00000355477 TFAP2CQ92754 450 aa14.85□□□□□ -0.03
CLN3-202ENST00000355477 FAM192AQ9GZU8 254 aa14.85□□□□□ -0.03
CLN3-202ENST00000355477 PPIL3Q9H2H8 161 aaKnown RBP14.85□□□□□ -0.03
CLN3-202ENST00000355477 TMEM138Q9NPI0 162 aa14.85□□□□□ -0.03
CLN3-202ENST00000355477 CNOT2Q9NZN8 540 aaKnown RBP14.85□□□□□ -0.03
CLN3-202ENST00000355477 ZNF581Q9P0T4 197 aa14.85□□□□□ -0.03
CLN3-202ENST00000355477 SIGLEC9Q9Y336 463 aa14.85□□□□□ -0.03
CLN3-202ENST00000355477 PNMA8CA0A1B0GUJ8 204 aa14.84□□□□□ -0.03
CLN3-202ENST00000355477 ODAMA1E959 279 aa14.84□□□□□ -0.03
CLN3-202ENST00000355477 HSPB6O14558 160 aa14.84□□□□□ -0.03
CLN3-202ENST00000355477 CDK2P24941 298 aa14.84□□□□□ -0.03
CLN3-202ENST00000355477 RSU1Q15404 277 aa14.84□□□□□ -0.03
CLN3-202ENST00000355477 FAM189A2Q15884 450 aa14.84□□□□□ -0.03
CLN3-202ENST00000355477 PIGYQ3MUY2 71 aa14.84□□□□□ -0.03
CLN3-202ENST00000355477 DDI2Q5TDH0 399 aa14.84□□□□□ -0.03
CLN3-202ENST00000355477 CCBE1Q6UXH8 406 aaPredicted RBP14.84□□□□□ -0.03
CLN3-202ENST00000355477 NRG4Q8WWG1 115 aa14.84□□□□□ -0.03
CLN3-202ENST00000355477 CPNE2Q96FN4 548 aaPredicted RBP14.84□□□□□ -0.03
CLN3-202ENST00000355477 CLEC7AQ9BXN2 247 aa14.84□□□□□ -0.03
CLN3-202ENST00000355477 FKBP14Q9NWM8 211 aa14.84□□□□□ -0.03
CLN3-202ENST00000355477 TAS2R3Q9NYW6 316 aa14.84□□□□□ -0.03
CLN3-202ENST00000355477 ING4Q9UNL4 249 aa14.84□□□□□ -0.03
CLN3-202ENST00000355477 HILPDAQ9Y5L2 63 aa14.84□□□□□ -0.03
CLN3-202ENST00000355477 TRAV8-7A0A075B6U6 113 aa14.83□□□□□ -0.04
CLN3-202ENST00000355477 FUOMA2VDF0 154 aa14.83□□□□□ -0.04
CLN3-202ENST00000355477 MAGEA13PA6NCF6 341 aa14.83□□□□□ -0.04
CLN3-202ENST00000355477 HTR3BO95264 441 aa14.83□□□□□ -0.04
CLN3-202ENST00000355477 BDKRB2P30411 391 aa14.83□□□□□ -0.04
CLN3-202ENST00000355477 ZNF93P35789 620 aaPredicted RBP14.83□□□□□ -0.04
CLN3-202ENST00000355477 PPP3R1P63098 170 aa14.83□□□□□ -0.04
CLN3-202ENST00000355477 Q499Y3 187 aa14.83□□□□□ -0.04
CLN3-202ENST00000355477 YIF1BQ5BJH7 314 aa14.83□□□□□ -0.04
CLN3-202ENST00000355477 UTF1Q5T230 341 aa14.83□□□□□ -0.04
CLN3-202ENST00000355477 HEPN1Q6WQI6 88 aa14.83□□□□□ -0.04
CLN3-202ENST00000355477 FOXRED1Q96CU9 486 aaPredicted RBP14.83□□□□□ -0.04
CLN3-202ENST00000355477 GAL3ST2Q9H3Q3 398 aa14.83□□□□□ -0.04
CLN3-202ENST00000355477 FBLN5Q9UBX5 448 aa14.83□□□□□ -0.04
CLN3-202ENST00000355477 A0A1W2PPK0 400 aa14.82□□□□□ -0.04
CLN3-202ENST00000355477 FAM172BPA6NC97 362 aa14.82□□□□□ -0.04
CLN3-202ENST00000355477 GPX5O75715 221 aa14.82□□□□□ -0.04
CLN3-202ENST00000355477 GABRA5P31644 462 aa14.82□□□□□ -0.04
CLN3-202ENST00000355477 KIR2DS4P43632 304 aa14.82□□□□□ -0.04
CLN3-202ENST00000355477 SLC34A1Q06495 639 aa14.82□□□□□ -0.04
CLN3-202ENST00000355477 RIPK1Q13546 671 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms