RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 GLIPR1P48060 266 aa14.28□□□□□ -0.12
HDDC3-201ENST00000330334 SNU13P55769 128 aaKnown RBP14.28□□□□□ -0.12
HDDC3-201ENST00000330334 AESQ08117 197 aa14.28□□□□□ -0.12
HDDC3-201ENST00000330334 CDK5R1Q15078 307 aa14.28□□□□□ -0.12
HDDC3-201ENST00000330334 PLA1AQ53H76 456 aa14.28□□□□□ -0.12
HDDC3-201ENST00000330334 ZNF691Q5VV52 312 aa14.28□□□□□ -0.12
HDDC3-201ENST00000330334 ABHD12Q8N2K0 398 aa14.28□□□□□ -0.12
HDDC3-201ENST00000330334 Q8NFD4 153 aa14.28□□□□□ -0.12
HDDC3-201ENST00000330334 OR4P4Q8NGL7 312 aa14.28□□□□□ -0.12
HDDC3-201ENST00000330334 FAM110DQ8TAY7 271 aaPredicted RBP14.28□□□□□ -0.12
HDDC3-201ENST00000330334 NDNFQ8TB73 568 aa14.28□□□□□ -0.12
HDDC3-201ENST00000330334 ZNF596Q8TC21 504 aa14.28□□□□□ -0.12
HDDC3-201ENST00000330334 CREB3L1Q96BA8 519 aa14.28□□□□□ -0.12
HDDC3-201ENST00000330334 PRSS22Q9GZN4 317 aa14.28□□□□□ -0.12
HDDC3-201ENST00000330334 SMPD3Q9NY59 655 aaPredicted RBP14.28□□□□□ -0.12
HDDC3-201ENST00000330334 DPM3Q9P2X0 92 aa14.28□□□□□ -0.12
HDDC3-201ENST00000330334 FOXJ3Q9UPW0 622 aa14.28□□□□□ -0.12
HDDC3-201ENST00000330334 HILPDAQ9Y5L2 63 aa14.28□□□□□ -0.12
HDDC3-201ENST00000330334 A0A087X0M5 115 aa14.27□□□□□ -0.13
HDDC3-201ENST00000330334 A0A1B0GX30 115 aa14.27□□□□□ -0.13
HDDC3-201ENST00000330334 SLC33A1O00400 549 aaPredicted RBP14.27□□□□□ -0.13
HDDC3-201ENST00000330334 WBP4O75554 376 aaKnown RBP14.27□□□□□ -0.13
HDDC3-201ENST00000330334 IGLV1-47P01700 117 aa14.27□□□□□ -0.13
HDDC3-201ENST00000330334 ZNF44P15621 663 aa14.27□□□□□ -0.13
HDDC3-201ENST00000330334 RAB3AP20336 220 aa14.27□□□□□ -0.13
HDDC3-201ENST00000330334 CDK2P24941 298 aa14.27□□□□□ -0.13
HDDC3-201ENST00000330334 SLC34A1Q06495 639 aa14.27□□□□□ -0.13
HDDC3-201ENST00000330334 RPL22L1Q6P5R6 122 aaKnown RBP14.27□□□□□ -0.13
HDDC3-201ENST00000330334 ASCL4Q6XD76 172 aa14.27□□□□□ -0.13
HDDC3-201ENST00000330334 ZNF555Q8NEP9 628 aa14.27□□□□□ -0.13
HDDC3-201ENST00000330334 WIPF2Q8TF74 440 aaPredicted RBP14.27□□□□□ -0.13
HDDC3-201ENST00000330334 NKX3-1Q99801 234 aaPredicted RBP14.27□□□□□ -0.13
HDDC3-201ENST00000330334 OR6C3Q9NZP0 311 aa14.27□□□□□ -0.13
HDDC3-201ENST00000330334 IRGMA1A4Y4 181 aa14.26□□□□□ -0.13
HDDC3-201ENST00000330334 F2RL2O00254 374 aa14.26□□□□□ -0.13
HDDC3-201ENST00000330334 MAGEB3O15480 346 aa14.26□□□□□ -0.13
HDDC3-201ENST00000330334 OPN1MWP04001 364 aa14.26□□□□□ -0.13
HDDC3-201ENST00000330334 ALDOBP05062 364 aa14.26□□□□□ -0.13
HDDC3-201ENST00000330334 OPN1MW2P0DN77 364 aa14.26□□□□□ -0.13
HDDC3-201ENST00000330334 OPN1MW3P0DN78 364 aa14.26□□□□□ -0.13
HDDC3-201ENST00000330334 PAX5Q02548 391 aa14.26□□□□□ -0.13
HDDC3-201ENST00000330334 SCN1BQ07699 218 aa14.26□□□□□ -0.13
HDDC3-201ENST00000330334 ZSCAN26Q16670 478 aa14.26□□□□□ -0.13
HDDC3-201ENST00000330334 KRBOX4Q5JUW0 171 aa14.26□□□□□ -0.13
HDDC3-201ENST00000330334 C16orf82Q7Z2V1 217 aa14.26□□□□□ -0.13
HDDC3-201ENST00000330334 TMEM219Q86XT9 240 aa14.26□□□□□ -0.13
HDDC3-201ENST00000330334 OR51T1Q8NGJ9 327 aa14.26□□□□□ -0.13
HDDC3-201ENST00000330334 GPR148Q8TDV2 347 aa14.26□□□□□ -0.13
HDDC3-201ENST00000330334 TSEN15Q8WW01 171 aaKnown RBP14.26□□□□□ -0.13
HDDC3-201ENST00000330334 COQ2Q96H96 371 aa14.26□□□□□ -0.13
HDDC3-201ENST00000330334 WNT10AQ9GZT5 417 aa14.26□□□□□ -0.13
HDDC3-201ENST00000330334 C8orf4Q9NR00 106 aa14.26□□□□□ -0.13
HDDC3-201ENST00000330334 TET2Q6N021 2002 aaPredicted RBP14.25□□□□□ -0.13
HDDC3-201ENST00000330334 ZNF729A6NN14 1252 aaPredicted RBP14.25□□□□□ -0.13
HDDC3-201ENST00000330334 LEUTXA8MZ59 168 aa14.25□□□□□ -0.13
HDDC3-201ENST00000330334 BAG2O95816 211 aa14.25□□□□□ -0.13
HDDC3-201ENST00000330334 CD2P06729 351 aa14.25□□□□□ -0.13
HDDC3-201ENST00000330334 CGB3P0DN86 165 aa14.25□□□□□ -0.13
HDDC3-201ENST00000330334 CGB7P0DN87 165 aa14.25□□□□□ -0.13
HDDC3-201ENST00000330334 VSIG10L2P0DP72 767 aa14.25□□□□□ -0.13
HDDC3-201ENST00000330334 BRS3P32247 399 aa14.25□□□□□ -0.13
HDDC3-201ENST00000330334 PTGFRP43088 359 aa14.25□□□□□ -0.13
HDDC3-201ENST00000330334 ARHGDIBP52566 201 aa14.25□□□□□ -0.13
HDDC3-201ENST00000330334 GTF2A1P52655 376 aaPredicted RBP14.25□□□□□ -0.13
HDDC3-201ENST00000330334 EMX1Q04741 257 aaPredicted RBP14.25□□□□□ -0.13
HDDC3-201ENST00000330334 IL13RA2Q14627 380 aa14.25□□□□□ -0.13
HDDC3-201ENST00000330334 PRAMEF5Q5TYX0 476 aa14.25□□□□□ -0.13
HDDC3-201ENST00000330334 TMPRSS11AQ6ZMR5 421 aa14.25□□□□□ -0.13
HDDC3-201ENST00000330334 ZNF565Q8N9K5 539 aa14.25□□□□□ -0.13
HDDC3-201ENST00000330334 OR4D6Q8NGJ1 314 aa14.25□□□□□ -0.13
HDDC3-201ENST00000330334 RGP1Q92546 391 aaPredicted RBP14.25□□□□□ -0.13
HDDC3-201ENST00000330334 LINC00574Q9H8X3 128 aa14.25□□□□□ -0.13
HDDC3-201ENST00000330334 KBTBD11-OT1A0A1B0GTJ5 212 aa14.24□□□□□ -0.13
HDDC3-201ENST00000330334 OGG1O15527 345 aa14.24□□□□□ -0.13
HDDC3-201ENST00000330334 CEACAM3P40198 252 aa14.24□□□□□ -0.13
HDDC3-201ENST00000330334 KCNJ3P48549 501 aa14.24□□□□□ -0.13
HDDC3-201ENST00000330334 ETV1P50549 477 aa14.24□□□□□ -0.13
HDDC3-201ENST00000330334 PRRX1P54821 245 aa14.24□□□□□ -0.13
HDDC3-201ENST00000330334 BLCAPP62952 87 aa14.24□□□□□ -0.13
HDDC3-201ENST00000330334 SMN1Q16637 294 aaKnown RBP14.24□□□□□ -0.13
HDDC3-201ENST00000330334 C17orf58Q2M2W7 97 aa14.24□□□□□ -0.13
HDDC3-201ENST00000330334 CNIH3Q8TBE1 160 aa14.24□□□□□ -0.13
HDDC3-201ENST00000330334 BARHL1Q9BZE3 327 aa14.24□□□□□ -0.13
HDDC3-201ENST00000330334 BABAM2Q9NXR7 383 aa14.24□□□□□ -0.13
HDDC3-201ENST00000330334 KIAA2026Q5HYC2 2103 aa14.23□□□□□ -0.13
HDDC3-201ENST00000330334 PRKDCP78527 4128 aaKnown RBP14.23□□□□□ -0.13
HDDC3-201ENST00000330334 TRAV24A0A0B4J272 114 aa14.23□□□□□ -0.13
HDDC3-201ENST00000330334 OOSP1A8MZH6 123 aa14.23□□□□□ -0.13
HDDC3-201ENST00000330334 H0YJX3 145 aa14.23□□□□□ -0.13
HDDC3-201ENST00000330334 LY6LH3BQJ8 138 aa14.23□□□□□ -0.13
HDDC3-201ENST00000330334 FBXO24O75426 580 aa14.23□□□□□ -0.13
HDDC3-201ENST00000330334 JUNBP17275 347 aaPredicted RBP14.23□□□□□ -0.13
HDDC3-201ENST00000330334 HABP2Q14520 560 aaPredicted RBP14.23□□□□□ -0.13
HDDC3-201ENST00000330334 TTC23Q5W5X9 447 aa14.23□□□□□ -0.13
HDDC3-201ENST00000330334 BAIAP2L2Q6UXY1 529 aa14.23□□□□□ -0.13
HDDC3-201ENST00000330334 PACRGLQ8N7B6 248 aa14.23□□□□□ -0.13
HDDC3-201ENST00000330334 C11orf44Q8N8P7 122 aa14.23□□□□□ -0.13
HDDC3-201ENST00000330334 OR51A2Q8NGJ7 313 aa14.23□□□□□ -0.13
HDDC3-201ENST00000330334 TNFAIP8L1Q8WVP5 186 aa14.23□□□□□ -0.13
HDDC3-201ENST00000330334 STMN2Q93045 179 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms