RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 ZNF681Q96N22 645 aa8.96□□□□□ -0.98
VPS39-214ENST00000614932 MAP1LC3BQ9GZQ8 125 aa8.96□□□□□ -0.98
VPS39-214ENST00000614932 ELOVL5Q9NYP7 299 aa8.96□□□□□ -0.98
VPS39-214ENST00000614932 FANCMQ8IYD8 2048 aa8.96□□□□□ -0.98
VPS39-214ENST00000614932 WDFY4Q6ZS81 3184 aa8.96□□□□□ -0.98
VPS39-214ENST00000614932 H0YGG7 62 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 TBX19O60806 448 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 DEDDO75618 318 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 RAB38P57729 211 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 ARF3P61204 181 aaPredicted RBP8.95□□□□□ -0.98
VPS39-214ENST00000614932 CST9LP1Q5W188 147 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 THSD4Q6ZMP0 1018 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 VN1R17PQ8TDU5 208 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 SLC37A2Q8TED4 501 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 TMEM186Q96B77 213 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 OR2A5Q96R48 311 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 ZMAT3Q9HA38 289 aaKnown RBP8.95□□□□□ -0.98
VPS39-214ENST00000614932 PRR13Q9NZ81 148 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 A0A087WV48 116 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 A0A1W2PRS3 328 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 BLACEA4D250 179 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 SLC17A2O00624 439 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 HINT1P49773 126 aaPredicted RBP8.95□□□□□ -0.98
VPS39-214ENST00000614932 ZNF92Q03936 586 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 PMPCAQ10713 525 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 SLAQ13239 276 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 NNATQ16517 81 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 ANKRD55Q3KP44 614 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 NIT1Q86X76 327 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 HOGA1Q86XE5 327 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 SGPP2Q8IWX5 399 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 NPEPL1Q8NDH3 523 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 OR4D6Q8NGJ1 314 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 FLVCR1-AS1Q8TAF5 88 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 MCHR1Q99705 422 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 WFDC1Q9HC57 220 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 FAM60AQ9NP50 221 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 MRPL27Q9P0M9 148 aaKnown RBP8.95□□□□□ -0.98
VPS39-214ENST00000614932 HEBP2Q9Y5Z4 205 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 NUP210LQ5VU65 1888 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 TRBV5-7A0A0A0MS05 114 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 C4orf47A7E2U8 309 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 CTSDP07339 412 aaPredicted RBP8.95□□□□□ -0.98
VPS39-214ENST00000614932 CD55P08174 381 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 SCGB1A1P11684 91 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 CTSEP14091 401 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 MMP9P14780 707 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 CD33P20138 364 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 RPS15AP62244 130 aaKnown RBP8.95□□□□□ -0.98
VPS39-214ENST00000614932 RAB11AP62491 216 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 TRA2BP62995 288 aaKnown RBP8.95□□□□□ -0.98
VPS39-214ENST00000614932 ZFP36L1Q07352 338 aaKnown RBP8.95□□□□□ -0.98
VPS39-214ENST00000614932 GGTLC2Q14390 218 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 TMEM41BQ5BJD5 291 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 FDX2Q6P4F2 183 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 DPPA3Q6W0C5 159 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 TMEM256Q8N2U0 113 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 LRRC25Q8N386 305 aaPredicted RBP8.95□□□□□ -0.98
VPS39-214ENST00000614932 OR10W1Q8NGF6 305 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 OR52L2PQ8NGH6 319 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 DNAJA3Q96EY1 480 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 Q96M85 177 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 ZNF576Q9H609 170 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 PSG11Q9UQ72 335 aa8.95□□□□□ -0.98
VPS39-214ENST00000614932 GALR2O43603 387 aaPredicted RBP8.94□□□□□ -0.98
VPS39-214ENST00000614932 HRH1P35367 487 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 ERVS71-1P61550 626 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 RPL23AP62750 156 aaKnown RBP8.94□□□□□ -0.98
VPS39-214ENST00000614932 Q6ZWC4 215 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 ZNF550Q7Z398 422 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 C11orf40Q8WZ69 217 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 TMEM230Q96A57 120 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 RERGQ96A58 199 aaPredicted RBP8.94□□□□□ -0.98
VPS39-214ENST00000614932 SCARF2Q96GP6 870 aaPredicted RBP8.94□□□□□ -0.98
VPS39-214ENST00000614932 DCBLD2Q96PD2 775 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 SDF2L1Q9HCN8 221 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 RCL1Q9Y2P8 373 aaKnown RBP8.94□□□□□ -0.98
VPS39-214ENST00000614932 FITM1A5D6W6 292 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 B3GALT2O43825 422 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 IGHV4-34P06331 123 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 FBXO45P0C2W1 286 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 TCN2P20062 427 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 DRD1P21728 446 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 PAFAH1B2P68402 229 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 MLC1Q15049 377 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 PLXDC2Q6UX71 529 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 TRAPPC6BQ86SZ2 158 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 C17orf78Q8N4C9 275 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 OR51L1Q8NGJ5 315 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 ZNF519Q8TB69 540 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 RNF166Q96A37 237 aaPredicted RBP8.94□□□□□ -0.98
VPS39-214ENST00000614932 PTX4Q96A99 478 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 FGGYQ96C11 551 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 RASL10BQ96S79 203 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 DAPP1Q9UN19 280 aa8.94□□□□□ -0.98
VPS39-214ENST00000614932 HYPMO75409 117 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 TOX4O94842 621 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 TNFSF15O95150 251 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 CT62P0C5K7 136 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 IGLC2P0DOY2 106 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms