RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 C11orf1Q9H5F2 150 aa15.2■□□□□ 0.02
SYNE3-202ENST00000553340 PLEKHF2Q9H8W4 249 aa15.2■□□□□ 0.02
SYNE3-202ENST00000553340 C19orf25Q9UFG5 118 aaPredicted RBP15.2■□□□□ 0.02
SYNE3-202ENST00000553340 MMP24Q9Y5R2 645 aa15.2■□□□□ 0.02
SYNE3-202ENST00000553340 IGSF23A1L1A6 192 aa15.2■□□□□ 0.02
SYNE3-202ENST00000553340 CDRT15L2A8MXV6 281 aa15.2■□□□□ 0.02
SYNE3-202ENST00000553340 MPPED1O15442 326 aa15.2■□□□□ 0.02
SYNE3-202ENST00000553340 UBE2KP61086 200 aa15.2■□□□□ 0.02
SYNE3-202ENST00000553340 RND3P61587 244 aa15.2■□□□□ 0.02
SYNE3-202ENST00000553340 MRPS34P82930 218 aaKnown RBP15.2■□□□□ 0.02
SYNE3-202ENST00000553340 MALLQ13021 153 aa15.2■□□□□ 0.02
SYNE3-202ENST00000553340 RAB30Q15771 203 aa15.2■□□□□ 0.02
SYNE3-202ENST00000553340 ABHD14AQ9BUJ0 271 aa15.2■□□□□ 0.02
SYNE3-202ENST00000553340 PCED1AQ9H1Q7 454 aa15.2■□□□□ 0.02
SYNE3-202ENST00000553340 FOXD3Q9UJU5 478 aaPredicted RBP15.2■□□□□ 0.02
SYNE3-202ENST00000553340 RFNGQ9Y644 331 aa15.2■□□□□ 0.02
SYNE3-202ENST00000553340 A0A087WWC5 75 aa15.19■□□□□ 0.02
SYNE3-202ENST00000553340 IGKV1-12A0A0C4DH73 117 aa15.19■□□□□ 0.02
SYNE3-202ENST00000553340 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.19■□□□□ 0.02
SYNE3-202ENST00000553340 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.19■□□□□ 0.02
SYNE3-202ENST00000553340 TRDCB7Z8K6 153 aa15.19■□□□□ 0.02
SYNE3-202ENST00000553340 TOX3O15405 576 aaPredicted RBP15.19■□□□□ 0.02
SYNE3-202ENST00000553340 NRASP01111 189 aa15.19■□□□□ 0.02
SYNE3-202ENST00000553340 PPYP01298 95 aa15.19■□□□□ 0.02
SYNE3-202ENST00000553340 IGKV1D-12P01611 117 aa15.19■□□□□ 0.02
SYNE3-202ENST00000553340 LCATP04180 440 aa15.19■□□□□ 0.02
SYNE3-202ENST00000553340 OMGP23515 440 aa15.19■□□□□ 0.02
SYNE3-202ENST00000553340 S100A2P29034 98 aa15.19■□□□□ 0.02
SYNE3-202ENST00000553340 NOVA1P51513 510 aaKnown RBP15.19■□□□□ 0.02
SYNE3-202ENST00000553340 OR8B8Q15620 311 aa15.19■□□□□ 0.02
SYNE3-202ENST00000553340 FAM185AQ8N0U4 392 aa15.19■□□□□ 0.02
SYNE3-202ENST00000553340 SPSB2Q99619 263 aa15.19■□□□□ 0.02
SYNE3-202ENST00000553340 SPIN2AQ99865 258 aa15.19■□□□□ 0.02
SYNE3-202ENST00000553340 SPIN2BQ9BPZ2 258 aa15.19■□□□□ 0.02
SYNE3-202ENST00000553340 ZNF724A8MTY0 619 aa15.19■□□□□ 0.02
SYNE3-202ENST00000553340 ZNF727A8MUV8 499 aa15.19■□□□□ 0.02
SYNE3-202ENST00000553340 PDCD6O75340 191 aa15.19■□□□□ 0.02
SYNE3-202ENST00000553340 SRP19P09132 144 aaKnown RBP15.19■□□□□ 0.02
SYNE3-202ENST00000553340 TCN2P20062 427 aa15.19■□□□□ 0.02
SYNE3-202ENST00000553340 CEBPGP53567 150 aa15.19■□□□□ 0.02
SYNE3-202ENST00000553340 SUMF1Q8NBK3 374 aa15.19■□□□□ 0.02
SYNE3-202ENST00000553340 ZNF837Q96EG3 531 aaPredicted RBP15.19■□□□□ 0.02
SYNE3-202ENST00000553340 TMEM222Q9H0R3 208 aa15.19■□□□□ 0.02
SYNE3-202ENST00000553340 SHANK1Q9Y566 2161 aa15.19■□□□□ 0.02
SYNE3-202ENST00000553340 CCDC85CA6NKD9 419 aa15.18■□□□□ 0.02
SYNE3-202ENST00000553340 NDUFA6P56556 154 aa15.18■□□□□ 0.02
SYNE3-202ENST00000553340 PRSS12P56730 875 aa15.18■□□□□ 0.02
SYNE3-202ENST00000553340 HAGHQ16775 308 aa15.18■□□□□ 0.02
SYNE3-202ENST00000553340 RAET1LQ5VY80 246 aa15.18■□□□□ 0.02
SYNE3-202ENST00000553340 TMEM211Q6ICI0 200 aa15.18■□□□□ 0.02
SYNE3-202ENST00000553340 ZNF574Q6ZN55 896 aaPredicted RBP15.18■□□□□ 0.02
SYNE3-202ENST00000553340 ZNF695Q8IW36 515 aa15.18■□□□□ 0.02
SYNE3-202ENST00000553340 ABCA7Q8IZY2 2146 aa15.18■□□□□ 0.02
SYNE3-202ENST00000553340 LYRM2Q9NU23 88 aaPredicted RBP15.18■□□□□ 0.02
SYNE3-202ENST00000553340 IL36GQ9NZH8 169 aa15.18■□□□□ 0.02
SYNE3-202ENST00000553340 UBE2J1Q9Y385 318 aaPredicted RBP15.18■□□□□ 0.02
SYNE3-202ENST00000553340 LAMA1P25391 3075 aa15.18■□□□□ 0.02
SYNE3-202ENST00000553340 SPEGQ15772 3267 aa15.18■□□□□ 0.02
SYNE3-202ENST00000553340 HSD17B6O14756 317 aa15.18■□□□□ 0.02
SYNE3-202ENST00000553340 YKT6O15498 198 aa15.18■□□□□ 0.02
SYNE3-202ENST00000553340 SYNGR3O43761 229 aa15.18■□□□□ 0.02
SYNE3-202ENST00000553340 ONECUT2O95948 504 aa15.18■□□□□ 0.02
SYNE3-202ENST00000553340 VAMP2P63027 116 aa15.18■□□□□ 0.02
SYNE3-202ENST00000553340 OR2B11Q5JQS5 317 aa15.18■□□□□ 0.02
SYNE3-202ENST00000553340 TMEM252Q8N6L7 170 aa15.18■□□□□ 0.02
SYNE3-202ENST00000553340 ZNF442Q9H7R0 627 aa15.18■□□□□ 0.02
SYNE3-202ENST00000553340 RARRES3Q9UL19 164 aa15.18■□□□□ 0.02
SYNE3-202ENST00000553340 LIPGQ9Y5X9 500 aa15.18■□□□□ 0.02
SYNE3-202ENST00000553340 ASCC3Q8N3C0 2202 aaKnown RBP15.18■□□□□ 0.02
SYNE3-202ENST00000553340 ZNF729A6NN14 1252 aaPredicted RBP15.17■□□□□ 0.02
SYNE3-202ENST00000553340 SSSCA1O60232 199 aa15.17■□□□□ 0.02
SYNE3-202ENST00000553340 ZNF674Q2M3X9 581 aa15.17■□□□□ 0.02
SYNE3-202ENST00000553340 TMEM42Q69YG0 159 aa15.17■□□□□ 0.02
SYNE3-202ENST00000553340 ZNF774Q6NX45 483 aa15.17■□□□□ 0.02
SYNE3-202ENST00000553340 ZNF429Q86V71 674 aa15.17■□□□□ 0.02
SYNE3-202ENST00000553340 OR5C1Q8NGR4 320 aa15.17■□□□□ 0.02
SYNE3-202ENST00000553340 OR1F12Q8NHA8 337 aa15.17■□□□□ 0.02
SYNE3-202ENST00000553340 TMEM171Q8WVE6 324 aa15.17■□□□□ 0.02
SYNE3-202ENST00000553340 GNPNAT1Q96EK6 184 aaPredicted RBP15.17■□□□□ 0.02
SYNE3-202ENST00000553340 GAR1Q9NY12 217 aaKnown RBP15.17■□□□□ 0.02
SYNE3-202ENST00000553340 DOK5Q9P104 306 aa15.17■□□□□ 0.02
SYNE3-202ENST00000553340 PTRH2Q9Y3E5 179 aaKnown RBP15.17■□□□□ 0.02
SYNE3-202ENST00000553340 DLK1P80370 383 aa15.17■□□□□ 0.02
SYNE3-202ENST00000553340 ELOBQ15370 118 aa15.17■□□□□ 0.02
SYNE3-202ENST00000553340 ZNF100Q8IYN0 542 aa15.17■□□□□ 0.02
SYNE3-202ENST00000553340 ZIC4Q8N9L1 334 aa15.17■□□□□ 0.02
SYNE3-202ENST00000553340 ZNF610Q8N9Z0 462 aa15.17■□□□□ 0.02
SYNE3-202ENST00000553340 PLSCR2Q9NRY7 297 aa15.17■□□□□ 0.02
SYNE3-202ENST00000553340 SLC7A11Q9UPY5 501 aa15.17■□□□□ 0.02
SYNE3-202ENST00000553340 EML6Q6ZMW3 1958 aa15.17■□□□□ 0.02
SYNE3-202ENST00000553340 H0YL77 283 aa15.16■□□□□ 0.02
SYNE3-202ENST00000553340 HSPB1P04792 205 aaKnown RBP15.16■□□□□ 0.02
SYNE3-202ENST00000553340 FUT6P51993 359 aa15.16■□□□□ 0.02
SYNE3-202ENST00000553340 PDCD1Q15116 288 aa15.16■□□□□ 0.02
SYNE3-202ENST00000553340 CDCP2Q5VXM1 449 aa15.16■□□□□ 0.02
SYNE3-202ENST00000553340 DPPA2Q7Z7J5 298 aa15.16■□□□□ 0.02
SYNE3-202ENST00000553340 Q8WTZ3 238 aa15.16■□□□□ 0.02
SYNE3-202ENST00000553340 ABHD14BQ96IU4 210 aa15.16■□□□□ 0.02
SYNE3-202ENST00000553340 TMEM56Q96MV1 263 aa15.16■□□□□ 0.02
SYNE3-202ENST00000553340 NIPSNAP3BQ9BS92 247 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms