RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 OR5AR1Q8NGP9 310 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 FRZBQ92765 325 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 ZNF501Q96CX3 271 aaPredicted RBP4.6□□□□□ -1.67
USP28-213ENST00000544967 ZG16BQ96DA0 208 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 SMIM10Q96HG1 83 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 C5orf66Q9H5L9 145 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 IER3IP1Q9Y5U9 82 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 HS3ST3B1Q9Y662 390 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 HEATR5BQ9P2D3 2071 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 SCN2AQ99250 2005 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 BSNQ9UPA5 3926 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 A0A087WV48 116 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 A0A1B0GU03 582 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 PRR32B1ATL7 298 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 HSPA12AO43301 675 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 BRI3O95415 125 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 TRGC2P03986 189 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 IL6RP08887 468 aaPredicted RBP4.6□□□□□ -1.67
USP28-213ENST00000544967 MMP9P14780 707 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 ZNF28P17035 718 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 AKR1C3P42330 323 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 NOVA1P51513 510 aaKnown RBP4.6□□□□□ -1.67
USP28-213ENST00000544967 FAM3BP58499 235 aaPredicted RBP4.6□□□□□ -1.67
USP28-213ENST00000544967 ERVFRD-1P60508 538 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 SUPT4H1P63272 117 aaKnown RBP4.6□□□□□ -1.67
USP28-213ENST00000544967 CSNK1G2P78368 415 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 SLC17A1Q14916 467 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 TGIF1Q15583 401 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 ZNF542PQ5EBM4 170 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 DCST2Q5T1A1 773 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 ZNF774Q6NX45 483 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 KIRREL2Q6UWL6 708 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 ZNF793Q6ZN11 406 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 OR2L3Q8NG85 312 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 OR4K13Q8NH42 304 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 ORAOV1Q8WV07 137 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 TMEM170AQ8WVE7 144 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 TSEN15Q8WW01 171 aaKnown RBP4.6□□□□□ -1.67
USP28-213ENST00000544967 PATE1Q8WXA2 126 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 BCL2L2Q92843 193 aaPredicted RBP4.6□□□□□ -1.67
USP28-213ENST00000544967 MSL2Q9HCI7 577 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 OR2S2Q9NQN1 319 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 DHDHQ9UQ10 334 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 C13orf42A0A1B0GVH6 325 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 A0A1B0GWA3 101 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 A0A1W2PS29 197 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 CLEC18AA5D8T8 446 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 B4DGG1 531 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 ZNF732B4DXR9 585 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 CYB5BO43169 146 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 FCMRO60667 390 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 RPP14O95059 124 aaKnown RBP4.6□□□□□ -1.67
USP28-213ENST00000544967 SYNGR4O95473 234 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 NTN1O95631 604 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 NR2C1P13056 603 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 UCP1P25874 307 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 CSNK1A1P48729 337 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 KLF3P57682 345 aaPredicted RBP4.6□□□□□ -1.67
USP28-213ENST00000544967 UBE2NP61088 152 aaKnown RBP4.6□□□□□ -1.67
USP28-213ENST00000544967 SELENOTP62341 195 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 RBX1P62877 108 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 HERPUD1Q15011 391 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 ZNF141Q15928 474 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 SGCBQ16585 318 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 TAF9Q16594 264 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 HES3Q5TGS1 186 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 COLCA1Q6ZS62 124 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 ZNF627Q7L945 461 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 OOSP2Q86WS3 158 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 SLC35G3Q8N808 338 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 CLEC18CQ8NCF0 446 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 SLC26A10Q8NG04 563 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 OTOSQ8NHW6 89 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 NEK7Q8TDX7 302 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 ZNF2Q9BSG1 426 aaPredicted RBP4.6□□□□□ -1.67
USP28-213ENST00000544967 PGPEP1Q9NXJ5 209 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 GVINP1Q7Z2Y8 2422 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 TRAV39A0A0B4J263 110 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 HELTA6NFD8 242 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 IFNA21P01568 189 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 GYPBP06028 91 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 CST2P09228 141 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 SNRPCP09234 159 aaKnown RBP4.59□□□□□ -1.67
USP28-213ENST00000544967 LIPCP11150 499 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 PRKAG1P54619 331 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 OR1D5P58170 312 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 PAX5Q02548 391 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 PRDX1Q06830 199 aaKnown RBP4.59□□□□□ -1.67
USP28-213ENST00000544967 C1orf61Q13536 156 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 ALKBH6Q3KRA9 238 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 ELOA3BQ3SY89 546 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 WDR38Q5JTN6 314 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 ASPHD2Q6ICH7 369 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 GRINAQ7Z429 371 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 ZNF429Q86V71 674 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 SGPP2Q8IWX5 399 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 APCDD1LQ8NCL9 501 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 SEMA6DQ8NFY4 1073 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 ELOA3Q8NG57 546 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 OR5T1Q8NG75 326 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms