RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 RAB32Q13637 225 aa13.98□□□□□ -0.17
COL4A1-204ENST00000543140 TMEM211Q6ICI0 200 aa13.98□□□□□ -0.17
COL4A1-204ENST00000543140 MKXQ8IYA7 352 aa13.98□□□□□ -0.17
COL4A1-204ENST00000543140 Q8NFD4 153 aa13.98□□□□□ -0.17
COL4A1-204ENST00000543140 OR5T2Q8NGG2 359 aa13.98□□□□□ -0.17
COL4A1-204ENST00000543140 OR5L1Q8NGL2 311 aa13.98□□□□□ -0.17
COL4A1-204ENST00000543140 NEK7Q8TDX7 302 aa13.98□□□□□ -0.17
COL4A1-204ENST00000543140 RBPMSQ93062 196 aaKnown RBP13.98□□□□□ -0.17
COL4A1-204ENST00000543140 C2orf50Q96LR7 162 aa13.98□□□□□ -0.17
COL4A1-204ENST00000543140 GTF3C1Q12789 2109 aa13.97□□□□□ -0.17
COL4A1-204ENST00000543140 RBM39Q14498 530 aaKnown RBP13.97□□□□□ -0.17
COL4A1-204ENST00000543140 TBC1D28Q2M2D7 210 aa13.97□□□□□ -0.17
COL4A1-204ENST00000543140 ELP2Q6IA86 826 aa13.97□□□□□ -0.17
COL4A1-204ENST00000543140 IGFL2Q6UWQ7 119 aa13.97□□□□□ -0.17
COL4A1-204ENST00000543140 FAM214BQ7L5A3 538 aa13.97□□□□□ -0.17
COL4A1-204ENST00000543140 C17orf78Q8N4C9 275 aa13.97□□□□□ -0.17
COL4A1-204ENST00000543140 SUN5Q8TC36 379 aa13.97□□□□□ -0.17
COL4A1-204ENST00000543140 NARFLQ9H6Q4 476 aa13.97□□□□□ -0.17
COL4A1-204ENST00000543140 C1orf123Q9NWV4 160 aa13.97□□□□□ -0.17
COL4A1-204ENST00000543140 INTS1Q8N201 2190 aaKnown RBP13.97□□□□□ -0.17
COL4A1-204ENST00000543140 CEP250Q9BV73 2442 aa13.97□□□□□ -0.17
COL4A1-204ENST00000543140 IGHV3-64DA0A0J9YX35 117 aa13.97□□□□□ -0.17
COL4A1-204ENST00000543140 ZNF14P17017 642 aaPredicted RBP13.97□□□□□ -0.17
COL4A1-204ENST00000543140 TGFBR3Q03167 851 aa13.97□□□□□ -0.17
COL4A1-204ENST00000543140 DPPA2Q7Z7J5 298 aa13.97□□□□□ -0.17
COL4A1-204ENST00000543140 CCDC28AQ8IWP9 274 aa13.97□□□□□ -0.17
COL4A1-204ENST00000543140 PDZD9Q8IXQ8 264 aa13.97□□□□□ -0.17
COL4A1-204ENST00000543140 SAXO1Q8IYX7 474 aa13.97□□□□□ -0.17
COL4A1-204ENST00000543140 POC1AQ8NBT0 407 aa13.97□□□□□ -0.17
COL4A1-204ENST00000543140 OR11L1Q8NGX0 322 aa13.97□□□□□ -0.17
COL4A1-204ENST00000543140 REG4Q9BYZ8 158 aa13.97□□□□□ -0.17
COL4A1-204ENST00000543140 OPA3Q9H6K4 179 aa13.97□□□□□ -0.17
COL4A1-204ENST00000543140 MGAQ8IWI9 3026 aa13.97□□□□□ -0.17
COL4A1-204ENST00000543140 MSGN1A6NI15 193 aa13.96□□□□□ -0.17
COL4A1-204ENST00000543140 RHBDL1O75783 438 aa13.96□□□□□ -0.17
COL4A1-204ENST00000543140 AADACP22760 399 aa13.96□□□□□ -0.17
COL4A1-204ENST00000543140 TMEM200AQ86VY9 491 aa13.96□□□□□ -0.17
COL4A1-204ENST00000543140 OR1S1Q8NH92 325 aa13.96□□□□□ -0.17
COL4A1-204ENST00000543140 RTN4IP1Q8WWV3 396 aaPredicted RBP13.96□□□□□ -0.17
COL4A1-204ENST00000543140 ARPC5LQ9BPX5 153 aa13.96□□□□□ -0.17
COL4A1-204ENST00000543140 OR2J1Q9GZK6 312 aa13.96□□□□□ -0.17
COL4A1-204ENST00000543140 HS3ST1O14792 307 aa13.96□□□□□ -0.18
COL4A1-204ENST00000543140 OR5AC1P0C628 307 aa13.96□□□□□ -0.18
COL4A1-204ENST00000543140 IAH1Q2TAA2 248 aaPredicted RBP13.96□□□□□ -0.18
COL4A1-204ENST00000543140 PLEKHN1Q494U1 663 aaPredicted RBP13.96□□□□□ -0.18
COL4A1-204ENST00000543140 VWA1Q6PCB0 445 aa13.96□□□□□ -0.18
COL4A1-204ENST00000543140 C9orf106Q8NAJ2 232 aa13.96□□□□□ -0.18
COL4A1-204ENST00000543140 MRPL24Q96A35 216 aaKnown RBP13.96□□□□□ -0.18
COL4A1-204ENST00000543140 MPC1Q9Y5U8 109 aa13.96□□□□□ -0.18
COL4A1-204ENST00000543140 SPTBN2O15020 2390 aa13.96□□□□□ -0.18
COL4A1-204ENST00000543140 TRBV6-7A0A0A0MS04 114 aa13.95□□□□□ -0.18
COL4A1-204ENST00000543140 MFSD2BA6NFX1 497 aa13.95□□□□□ -0.18
COL4A1-204ENST00000543140 GLP1RP43220 463 aa13.95□□□□□ -0.18
COL4A1-204ENST00000543140 NOVA1P51513 510 aaKnown RBP13.95□□□□□ -0.18
COL4A1-204ENST00000543140 GNG3P63215 75 aa13.95□□□□□ -0.18
COL4A1-204ENST00000543140 ANGPTL6Q8NI99 470 aa13.95□□□□□ -0.18
COL4A1-204ENST00000543140 SLC2A9Q9NRM0 540 aa13.95□□□□□ -0.18
COL4A1-204ENST00000543140 KCNMB2Q9Y691 235 aa13.95□□□□□ -0.18
COL4A1-204ENST00000543140 MUC6Q6W4X9 2439 aa13.95□□□□□ -0.18
COL4A1-204ENST00000543140 BET1O15155 118 aa13.95□□□□□ -0.18
COL4A1-204ENST00000543140 AGFG2O95081 481 aa13.95□□□□□ -0.18
COL4A1-204ENST00000543140 SCTP09683 121 aa13.95□□□□□ -0.18
COL4A1-204ENST00000543140 PRSS54Q6PEW0 395 aa13.95□□□□□ -0.18
COL4A1-204ENST00000543140 ZNF573Q86YE8 665 aa13.95□□□□□ -0.18
COL4A1-204ENST00000543140 PRSS33Q8NF86 280 aa13.95□□□□□ -0.18
COL4A1-204ENST00000543140 RDH5Q92781 318 aa13.95□□□□□ -0.18
COL4A1-204ENST00000543140 CDH20Q9HBT6 801 aa13.95□□□□□ -0.18
COL4A1-204ENST00000543140 GLRX2Q9NS18 164 aa13.95□□□□□ -0.18
COL4A1-204ENST00000543140 PFDN2Q9UHV9 154 aa13.95□□□□□ -0.18
COL4A1-204ENST00000543140 FAM90A10PA6NDY2 464 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 FAM90A18PA6NE21 464 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 FAM90A16PA6NEW6 464 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 FAM90A20PA6NIJ5 464 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 FAM90A8PA6NJQ4 464 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 FAM90A7PA6NKC0 464 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 FAM90A22PA8MWA6 464 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 FAM90A12PA8MX19 464 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 FAM90A5PA8MXJ8 464 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 FAM90A23PA8MXZ1 464 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 SMPD2O60906 423 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 FAM90A15PP0C7V4 464 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 FAM90A13PP0C7W8 464 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 FAM90A14PP0C7W9 464 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 FAM90A24PP0C7X0 464 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 HERV-K104P61576 105 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 PPP1CBP62140 327 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 FOXF2Q12947 444 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 ALKBH6Q3KRA9 238 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 GGNBP1Q5YKI7 109 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 MOB3AQ96BX8 217 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 TAAR6Q96RI8 345 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 NAA60Q9H7X0 242 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 KCNIP3Q9Y2W7 256 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 GVINP1Q7Z2Y8 2422 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 MAP1BP46821 2468 aaKnown RBP13.94□□□□□ -0.18
COL4A1-204ENST00000543140 OR5B21A6NL26 309 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 LGALS8O00214 317 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 KIR2DL2P43627 348 aaPredicted RBP13.94□□□□□ -0.18
COL4A1-204ENST00000543140 IL15RAQ13261 267 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 GABRA6Q16445 453 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms