RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 SOD3P08294 240 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 ITGA5P08648 1049 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 TFF3Q07654 80 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 SMAGPQ0VAQ4 97 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 IL24Q13007 206 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 MEF2DQ14814 521 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 SAMD13Q5VXD3 122 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 OR2T2Q6IF00 324 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 TMUB2Q71RG4 321 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 MDP1Q86V88 176 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 COMMD2Q86X83 199 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 AQP11Q8NBQ7 271 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 OR52E2Q8NGJ4 325 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 FGFBP3Q8TAT2 258 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 LIPHQ8WWY8 451 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 ASB13Q8WXK3 278 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 TSPAN32Q96QS1 320 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 GSX1Q9H4S2 264 aaPredicted RBP6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 REEP1Q9H902 201 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 MYOZ1Q9NP98 299 aaPredicted RBP6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 ARHGAP21Q5T5U3 1957 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 TRAV26-1A0A087WT03 109 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 IGKV1D-43A0A0B4J1Z2 117 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 MS4A18H0YCH9 400 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 THBDP07204 575 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 MRPL3P09001 348 aaKnown RBP6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 THBS2P35442 1172 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 RAB7AP51149 207 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 SNTB2Q13425 540 aaKnown RBP6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 HLXQ14774 488 aaPredicted RBP6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 TBCEQ15813 527 aaPredicted RBP6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 ZNF74Q16587 644 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 MS4A18Q3C1V0 323 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 C22orf42Q6IC83 251 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 OR10K2Q6IF99 312 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 PRSS48Q7RTY5 328 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 SYT9Q86SS6 491 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 Q96MF0 132 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 SEBOXQ9HB31 216 aaPredicted RBP6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 NGBQ9NPG2 151 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 RNF115Q9Y4L5 304 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 A0A1B0GVI7 797 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 UBE2QL1A1L167 161 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 C5orf49A4QMS7 147 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 FAM220BPB1ANY3 271 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 RAB36O95755 333 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 CD5P06127 495 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 SRP9P49458 86 aaKnown RBP6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 PCBP3P57721 371 aaKnown RBP6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 HTD2P86397 168 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 HERPUD1Q15011 391 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 NKPD1Q17RQ9 610 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 HIST2H3PS2Q5TEC6 136 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 LEG1Q6P5S2 330 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 Q6ZT83 130 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 BCDIN3DQ7Z5W3 292 aaKnown RBP6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 BAP18Q8IXM2 172 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 ZIC4Q8N9L1 334 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 PYURFQ96I23 114 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 OXGR1Q96P68 337 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 MEGF9Q9H1U4 602 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 TXNL4BQ9NX01 149 aaKnown RBP6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 PLEK2Q9NYT0 353 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 DOK5Q9P104 306 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 EXPH5Q8NEV8 1989 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 ZNF503-AS2A6NEH8 195 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 RNF223E7ERA6 249 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 GPRIN2O60269 458 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 WNT11O96014 354 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 MT-CO2P00403 227 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 F2RL1P55085 397 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 CCL8P80075 99 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 NHLRC3Q5JS37 347 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 TPTE2P1Q5T6R2 138 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 LHFPL4Q7Z7J7 247 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 ZNF546Q86UE3 836 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 GABRG1Q8N1C3 465 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 STEAP2Q8NFT2 490 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 DVL3Q92997 716 aaPredicted RBP6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 C5orf30Q96GV9 206 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 MGLLQ99685 303 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 GPA33Q99795 319 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 FOXB1Q99853 325 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 SLITRK2Q9H156 845 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 NOX3Q9HBY0 568 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 A4GNTQ9UNA3 340 aa6.82□□□□□ -1.32
LIMCH1-219ENST00000514096 OR5H1A6NKK0 313 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 PLPP3O14495 311 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 PRKYO43930 277 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 IL18BPO95998 194 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 METTL15P1P0C7V9 234 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 IRF2P14316 349 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 ID1P41134 155 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 OR12D2P58182 307 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 ELFN2Q5R3F8 820 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 SYT6Q5T7P8 510 aaPredicted RBP6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 UNQ6126/PRO20091Q6UXV3 157 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 IL17RELQ6ZVW7 336 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 CIARTQ8N365 385 aaPredicted RBP6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms