RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 ZFP30Q9Y2G7 519 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 ABCA7Q8IZY2 2146 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 NKX6-3A6NJ46 265 aa6.34□□□□□ -1.4
LIMCH1-207ENST00000508466 E5RGE8 158 aa6.34□□□□□ -1.4
LIMCH1-207ENST00000508466 H7BYZ3 331 aa6.34□□□□□ -1.4
LIMCH1-207ENST00000508466 TBX19O60806 448 aa6.34□□□□□ -1.4
LIMCH1-207ENST00000508466 TMEM50AO95807 157 aa6.34□□□□□ -1.4
LIMCH1-207ENST00000508466 CRYAAP02489 173 aa6.34□□□□□ -1.4
LIMCH1-207ENST00000508466 CD46P15529 392 aa6.34□□□□□ -1.4
LIMCH1-207ENST00000508466 CCR2P41597 374 aa6.34□□□□□ -1.4
LIMCH1-207ENST00000508466 THBS3P49746 956 aa6.34□□□□□ -1.4
LIMCH1-207ENST00000508466 SPIN3Q5JUX0 258 aa6.34□□□□□ -1.4
LIMCH1-207ENST00000508466 CARD17Q5XLA6 110 aa6.34□□□□□ -1.4
LIMCH1-207ENST00000508466 SLC18B1Q6NT16 456 aa6.34□□□□□ -1.4
LIMCH1-207ENST00000508466 ABHD12BQ7Z5M8 362 aaPredicted RBP6.34□□□□□ -1.4
LIMCH1-207ENST00000508466 STPG3Q8N7X2 389 aa6.34□□□□□ -1.4
LIMCH1-207ENST00000508466 OR2M3Q8NG83 312 aa6.34□□□□□ -1.4
LIMCH1-207ENST00000508466 RTN4IP1Q8WWV3 396 aaPredicted RBP6.34□□□□□ -1.4
LIMCH1-207ENST00000508466 PATE1Q8WXA2 126 aa6.34□□□□□ -1.4
LIMCH1-207ENST00000508466 PIGTQ969N2 578 aa6.34□□□□□ -1.4
LIMCH1-207ENST00000508466 APH1AQ96BI3 265 aa6.34□□□□□ -1.4
LIMCH1-207ENST00000508466 RASL10BQ96S79 203 aa6.34□□□□□ -1.4
LIMCH1-207ENST00000508466 VAMP8Q9BV40 100 aa6.34□□□□□ -1.4
LIMCH1-207ENST00000508466 NXF5Q9H1B4 397 aaKnown RBP6.34□□□□□ -1.4
LIMCH1-207ENST00000508466 NSG2Q9Y328 171 aa6.34□□□□□ -1.4
LIMCH1-207ENST00000508466 PPIL1Q9Y3C6 166 aa6.34□□□□□ -1.4
LIMCH1-207ENST00000508466 BRWD3Q6RI45 1802 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 FAM230AA0A1W2PPH8 454 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 SHISA8B8ZZ34 492 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 PROB1E7EW31 1015 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 HPNP05981 417 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 UMODP07911 640 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 HIST1H1DP16402 221 aaKnown RBP6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 PPP1CAP62136 330 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 PMP22Q01453 160 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 ZNF74Q16587 644 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 FFAR4Q5NUL3 377 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 ABLIM2Q6H8Q1 611 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 LCN12Q6JVE5 192 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 Q6ZNB5 142 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 D2HGDHQ8N465 521 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 ZNF596Q8TC21 504 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 NAA38Q9BRA0 125 aaKnown RBP6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 MIEN1Q9BRT3 115 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 TMEM59Q9BXS4 323 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 PELI2Q9HAT8 420 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 MANBALQ9NQG1 85 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 RPRMQ9NS64 109 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 OR6C3Q9NZP0 311 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 C19orf53Q9UNZ5 99 aaPredicted RBP6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 TRANK1O15050 2925 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 HIDE1A8MVS5 230 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 A8MXE2 369 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 TMEM238C9JI98 176 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 SAP30O75446 220 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 GAPDHP04406 335 aaKnown RBP6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 PSG1P11464 419 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 LYL1P12980 280 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 OR10J1P30954 320 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 CDC34P49427 236 aaPredicted RBP6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 TCTAP57738 103 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 WBP2NLQ6ICG8 309 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 FBXO42Q6P3S6 717 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 Q7L0L9 218 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 NOXO1Q8NFA2 376 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 NUDT10Q8NFP7 164 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 OR51G1Q8NGK1 321 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 OR13D1Q8NGV5 346 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 NUDT11Q96G61 164 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 CDH20Q9HBT6 801 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 TRAPPC1Q9Y5R8 145 aa6.33□□□□□ -1.4
LIMCH1-207ENST00000508466 SVILO95425 2214 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 PLCE1Q9P212 2302 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 C1QTNF9BB2RNN3 333 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 H3BMH7 237 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 HSPB6O14558 160 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 ARPC3O15145 178 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 CHRM2P08172 466 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 PGCP20142 388 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 OTX1P32242 354 aaPredicted RBP6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 UBE2G2P60604 165 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 HIST1H3AP68431 136 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 GABREP78334 506 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 GAGE1Q13065 139 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 FAHD2BQ6P2I3 314 aaPredicted RBP6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 FIGLAQ6QHK4 219 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 CATSPERDQ86XM0 798 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 FBXL14Q8N1E6 418 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 FAM19A2Q8N3H0 131 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 CDRT4Q8N9R6 151 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 OR1K1Q8NGR3 316 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 OR9A4Q8NGU2 314 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 OR14L1PQ8NHC6 308 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 WFDC12Q8WWY7 111 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 FAHD2AQ96GK7 314 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 PECRQ9BY49 303 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 SAMD10Q9BYL1 202 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 MMP25Q9NPA2 562 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 PRSS50Q9UI38 385 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 SPENQ96T58 3664 aaKnown RBP6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms