RNA–Protein interactions for RNA: ENST00000493456.5

NUP50-218, Transcript of nucleoporin 50, human

TSL 3

Gene NUP50, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP50-218	ENST00000493456	IL36RN	Q9UBH0	155 aa		13.96	□□□□□ -0.17
NUP50-218	ENST00000493456	FAM172BP	A6NC97	362 aa		13.95	□□□□□ -0.18
NUP50-218	ENST00000493456	FAM90A18P	A6NE21	464 aa		13.95	□□□□□ -0.18
NUP50-218	ENST00000493456	FAM90A16P	A6NEW6	464 aa		13.95	□□□□□ -0.18
NUP50-218	ENST00000493456	FAM90A20P	A6NIJ5	464 aa		13.95	□□□□□ -0.18
NUP50-218	ENST00000493456	FAM90A9P	A6NNJ1	464 aa		13.95	□□□□□ -0.18
NUP50-218	ENST00000493456	FAM90A12P	A8MX19	464 aa		13.95	□□□□□ -0.18
NUP50-218	ENST00000493456	FAM90A5P	A8MXJ8	464 aa		13.95	□□□□□ -0.18
NUP50-218	ENST00000493456	LY6L	H3BQJ8	138 aa		13.95	□□□□□ -0.18
NUP50-218	ENST00000493456	INMT	O95050	263 aa		13.95	□□□□□ -0.18
NUP50-218	ENST00000493456	CST1	P01037	141 aa		13.95	□□□□□ -0.18
NUP50-218	ENST00000493456	FAM90A15P	P0C7V4	464 aa		13.95	□□□□□ -0.18
NUP50-218	ENST00000493456	FAM90A13P	P0C7W8	464 aa		13.95	□□□□□ -0.18
NUP50-218	ENST00000493456	FAM90A14P	P0C7W9	464 aa		13.95	□□□□□ -0.18
NUP50-218	ENST00000493456	FAM90A24P	P0C7X0	464 aa		13.95	□□□□□ -0.18
NUP50-218	ENST00000493456	CXCR4	P61073	352 aa		13.95	□□□□□ -0.18
NUP50-218	ENST00000493456	C9orf66	Q5T8R8	295 aa		13.95	□□□□□ -0.18
NUP50-218	ENST00000493456	FAM58A	Q8N1B3	248 aa		13.95	□□□□□ -0.18
NUP50-218	ENST00000493456		Q8NFD4	153 aa		13.95	□□□□□ -0.18
NUP50-218	ENST00000493456	BORCS8	Q96FH0	119 aa		13.95	□□□□□ -0.18
NUP50-218	ENST00000493456	NOL4L	Q96MY1	436 aa	Predicted RBP	13.95	□□□□□ -0.18
NUP50-218	ENST00000493456	PRR25	Q96S07	402 aa		13.95	□□□□□ -0.18
NUP50-218	ENST00000493456	APOL4	Q9BPW4	351 aa		13.95	□□□□□ -0.18
NUP50-218	ENST00000493456	CHST5	Q9GZS9	411 aa		13.95	□□□□□ -0.18
NUP50-218	ENST00000493456	SLC25A19	Q9HC21	320 aa		13.95	□□□□□ -0.18
NUP50-218	ENST00000493456	RBFOX1	Q9NWB1	397 aa	Known RBP	13.95	□□□□□ -0.18
NUP50-218	ENST00000493456		A0A087X0M5	115 aa		13.94	□□□□□ -0.18
NUP50-218	ENST00000493456		A0A1B0GX30	115 aa		13.94	□□□□□ -0.18
NUP50-218	ENST00000493456	SERPINE3	A8MV23	424 aa		13.94	□□□□□ -0.18
NUP50-218	ENST00000493456	CCL24	O00175	119 aa		13.94	□□□□□ -0.18
NUP50-218	ENST00000493456	FGF16	O43320	207 aa		13.94	□□□□□ -0.18
NUP50-218	ENST00000493456	ENTPD6	O75354	484 aa		13.94	□□□□□ -0.18
NUP50-218	ENST00000493456	CYB5A	P00167	134 aa		13.94	□□□□□ -0.18
NUP50-218	ENST00000493456	CHAT	P28329	748 aa		13.94	□□□□□ -0.18
NUP50-218	ENST00000493456	PTGFR	P43088	359 aa		13.94	□□□□□ -0.18
NUP50-218	ENST00000493456	LUM	P51884	338 aa	Predicted RBP	13.94	□□□□□ -0.18
NUP50-218	ENST00000493456	RAB25	P57735	213 aa		13.94	□□□□□ -0.18
NUP50-218	ENST00000493456	KPNB1	Q14974	876 aa	Known RBP	13.94	□□□□□ -0.18
NUP50-218	ENST00000493456	ARHGAP24	Q8N264	748 aa		13.94	□□□□□ -0.18
NUP50-218	ENST00000493456	C5orf56	Q8N8D9	126 aa		13.94	□□□□□ -0.18
NUP50-218	ENST00000493456	CCDC54	Q8NEL0	328 aa		13.94	□□□□□ -0.18
NUP50-218	ENST00000493456	OR4D6	Q8NGJ1	314 aa		13.94	□□□□□ -0.18
NUP50-218	ENST00000493456	OR5M8	Q8NGP6	311 aa		13.94	□□□□□ -0.18
NUP50-218	ENST00000493456	RAX2	Q96IS3	184 aa		13.94	□□□□□ -0.18
NUP50-218	ENST00000493456	ASCL2	Q99929	193 aa		13.94	□□□□□ -0.18
NUP50-218	ENST00000493456	SYT7	O43581	403 aa		13.93	□□□□□ -0.18
NUP50-218	ENST00000493456	SERPINA3	P01011	423 aa		13.93	□□□□□ -0.18
NUP50-218	ENST00000493456	DUSP1	P28562	367 aa		13.93	□□□□□ -0.18
NUP50-218	ENST00000493456	DOC2B	Q14184	412 aa		13.93	□□□□□ -0.18
NUP50-218	ENST00000493456	RBM39	Q14498	530 aa	Known RBP	13.93	□□□□□ -0.18
NUP50-218	ENST00000493456	PLEKHG7	Q6ZR37	379 aa		13.93	□□□□□ -0.18
NUP50-218	ENST00000493456	FOXRED2	Q8IWF2	684 aa		13.93	□□□□□ -0.18
NUP50-218	ENST00000493456	OR8U1	Q8NH10	309 aa		13.93	□□□□□ -0.18
NUP50-218	ENST00000493456	TOMM40L	Q969M1	308 aa		13.93	□□□□□ -0.18
NUP50-218	ENST00000493456	RPE	Q96AT9	228 aa		13.93	□□□□□ -0.18
NUP50-218	ENST00000493456	DUX3	Q96PT4	197 aa		13.93	□□□□□ -0.18
NUP50-218	ENST00000493456	EXOSC4	Q9NPD3	245 aa	Known RBP	13.93	□□□□□ -0.18
NUP50-218	ENST00000493456	ARL8B	Q9NVJ2	186 aa		13.93	□□□□□ -0.18
NUP50-218	ENST00000493456	TVP23B	Q9NYZ1	205 aa		13.93	□□□□□ -0.18
NUP50-218	ENST00000493456	AMMECR1	Q9Y4X0	333 aa	Predicted RBP	13.93	□□□□□ -0.18
NUP50-218	ENST00000493456	STARD9	Q9P2P6	4700 aa		13.93	□□□□□ -0.18
NUP50-218	ENST00000493456	CSMD3	Q7Z407	3707 aa		13.92	□□□□□ -0.18
NUP50-218	ENST00000493456	SNX3	O60493	162 aa		13.92	□□□□□ -0.18
NUP50-218	ENST00000493456	SNRNP70	P08621	437 aa	Known RBP	13.92	□□□□□ -0.18
NUP50-218	ENST00000493456	PRKACA	P17612	351 aa		13.92	□□□□□ -0.18
NUP50-218	ENST00000493456	BCL3	P20749	454 aa		13.92	□□□□□ -0.18
NUP50-218	ENST00000493456	GDNF	P39905	211 aa		13.92	□□□□□ -0.18
NUP50-218	ENST00000493456	NPBWR2	P48146	333 aa		13.92	□□□□□ -0.18
NUP50-218	ENST00000493456	RBP2	P50120	134 aa		13.92	□□□□□ -0.18
NUP50-218	ENST00000493456	TRIM25	Q14258	630 aa	Known RBP	13.92	□□□□□ -0.18
NUP50-218	ENST00000493456	HSP90B2P	Q58FF3	399 aa		13.92	□□□□□ -0.18
NUP50-218	ENST00000493456	TMEM236	Q5W0B7	351 aa		13.92	□□□□□ -0.18
NUP50-218	ENST00000493456	TEX38	Q6PEX7	206 aa		13.92	□□□□□ -0.18
NUP50-218	ENST00000493456	SLC35E3	Q7Z769	313 aa		13.92	□□□□□ -0.18
NUP50-218	ENST00000493456	TMEM179B	Q7Z7N9	219 aa		13.92	□□□□□ -0.18
NUP50-218	ENST00000493456	SLC35F2	Q8IXU6	374 aa		13.92	□□□□□ -0.18
NUP50-218	ENST00000493456	STPG2	Q8N412	459 aa		13.92	□□□□□ -0.18
NUP50-218	ENST00000493456	DNAAF1	Q8NEP3	725 aa		13.92	□□□□□ -0.18
NUP50-218	ENST00000493456	C10orf35	Q96D05	121 aa		13.92	□□□□□ -0.18
NUP50-218	ENST00000493456	MRM2	Q9UI43	246 aa	Known RBP	13.92	□□□□□ -0.18
NUP50-218	ENST00000493456	ODAM	A1E959	279 aa		13.91	□□□□□ -0.18
NUP50-218	ENST00000493456	ZNF670-ZNF695	F2Z2N8	137 aa		13.91	□□□□□ -0.18
NUP50-218	ENST00000493456	SIRPB1	O00241	398 aa		13.91	□□□□□ -0.18
NUP50-218	ENST00000493456	GNGT2	O14610	69 aa		13.91	□□□□□ -0.18
NUP50-218	ENST00000493456	SH2D1B	O14796	132 aa		13.91	□□□□□ -0.18
NUP50-218	ENST00000493456	OR2H2	O95918	312 aa		13.91	□□□□□ -0.18
NUP50-218	ENST00000493456	IGHG2	P01859	326 aa		13.91	□□□□□ -0.18
NUP50-218	ENST00000493456	CSN2	P05814	226 aa		13.91	□□□□□ -0.18
NUP50-218	ENST00000493456	ANXA8	P13928	327 aa		13.91	□□□□□ -0.18
NUP50-218	ENST00000493456	TMEM11	P17152	192 aa		13.91	□□□□□ -0.18
NUP50-218	ENST00000493456	ECI1	P42126	302 aa		13.91	□□□□□ -0.18
NUP50-218	ENST00000493456	GLIPR1	P48060	266 aa		13.91	□□□□□ -0.18
NUP50-218	ENST00000493456	ATP1B3	P54709	279 aa		13.91	□□□□□ -0.18
NUP50-218	ENST00000493456	HES1	Q14469	280 aa		13.91	□□□□□ -0.18
NUP50-218	ENST00000493456	OR56B4	Q8NH76	319 aa		13.91	□□□□□ -0.18
NUP50-218	ENST00000493456	OR9G1	Q8NH87	305 aa		13.91	□□□□□ -0.18
NUP50-218	ENST00000493456	FAM107B	Q9H098	131 aa		13.91	□□□□□ -0.18
NUP50-218	ENST00000493456	CLN6	Q9NWW5	311 aa		13.91	□□□□□ -0.18
NUP50-218	ENST00000493456	LINC00527	Q9UJ94	153 aa		13.91	□□□□□ -0.18
NUP50-218	ENST00000493456	ZNF729	A6NN14	1252 aa	Predicted RBP	13.9	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms