RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 OR8H2Q8N162 312 aa11.96□□□□□ -0.49
SKA1-202ENST00000398452 FAM89BQ8N5H3 189 aa11.96□□□□□ -0.49
SKA1-202ENST00000398452 GCSAMQ8N6F7 178 aa11.96□□□□□ -0.49
SKA1-202ENST00000398452 BORCS5Q969J3 196 aa11.96□□□□□ -0.49
SKA1-202ENST00000398452 PLEKHA6Q9Y2H5 1048 aa11.96□□□□□ -0.49
SKA1-202ENST00000398452 PPIAL4AQ9Y536 164 aa11.96□□□□□ -0.49
SKA1-202ENST00000398452 V9GYH0 126 aa11.96□□□□□ -0.49
SKA1-202ENST00000398452 A0A0G2JMP0 313 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 A0A0X1KG70 313 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 OOEPA6NGQ2 149 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 OR2AT4A6NND4 320 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 SERPINE3A8MV23 424 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 F8VVB4 439 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 F8VWA3 439 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 TMEM178BH3BS89 294 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 RAB27BO00194 218 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 LGALS8O00214 317 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 WNT9BO14905 357 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 CD3GP09693 182 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 HIST1H1DP16402 221 aaKnown RBP11.95□□□□□ -0.5
SKA1-202ENST00000398452 DUSP1P28562 367 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 PMELP40967 661 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 EFNA4P52798 201 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 MRPS11P82912 194 aaKnown RBP11.95□□□□□ -0.5
SKA1-202ENST00000398452 ZNF146Q15072 292 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 PNLIPRP3Q17RR3 467 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 SPRNQ5BIV9 151 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 SFRP4Q6FHJ7 346 aaPredicted RBP11.95□□□□□ -0.5
SKA1-202ENST00000398452 Q8N402 240 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 C19orf18Q8NEA5 215 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 OR4M2Q8NGB6 313 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 FCAMRQ8WWV6 532 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 RAB1CQ92928 201 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 ARHGAP5-AS1Q96IT6 56 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 CCDC32Q9BV29 185 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 WDR13Q9H1Z4 485 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 BARX1Q9HBU1 254 aaPredicted RBP11.95□□□□□ -0.5
SKA1-202ENST00000398452 HES4Q9HCC6 221 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 MYOZ1Q9NP98 299 aaPredicted RBP11.95□□□□□ -0.5
SKA1-202ENST00000398452 HSF4Q9ULV5 492 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 WIPI2Q9Y4P8 454 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 AKAP6Q13023 2319 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 DCHS2Q6V1P9 2916 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 PDZD2O15018 2839 aa11.95□□□□□ -0.5
SKA1-202ENST00000398452 ABCA4P78363 2273 aa11.94□□□□□ -0.5
SKA1-202ENST00000398452 RFPL4AA6NLU0 287 aa11.94□□□□□ -0.5
SKA1-202ENST00000398452 RFPL4AL1F8VTS6 287 aa11.94□□□□□ -0.5
SKA1-202ENST00000398452 SIRPB1O00241 398 aa11.94□□□□□ -0.5
SKA1-202ENST00000398452 SULT1C2O00338 296 aa11.94□□□□□ -0.5
SKA1-202ENST00000398452 CTDSPLO15194 276 aa11.94□□□□□ -0.5
SKA1-202ENST00000398452 F12P00748 615 aaPredicted RBP11.94□□□□□ -0.5
SKA1-202ENST00000398452 LHBP01229 141 aa11.94□□□□□ -0.5
SKA1-202ENST00000398452 GLAP06280 429 aa11.94□□□□□ -0.5
SKA1-202ENST00000398452 GNB3P16520 340 aa11.94□□□□□ -0.5
SKA1-202ENST00000398452 EGR1P18146 543 aa11.94□□□□□ -0.5
SKA1-202ENST00000398452 PDCD1Q15116 288 aa11.94□□□□□ -0.5
SKA1-202ENST00000398452 MOGAT2Q3SYC2 334 aa11.94□□□□□ -0.5
SKA1-202ENST00000398452 PAN3Q58A45 887 aaKnown RBP11.94□□□□□ -0.5
SKA1-202ENST00000398452 MFSD4AQ8N468 514 aa11.94□□□□□ -0.5
SKA1-202ENST00000398452 ASCC1Q8N9N2 400 aaKnown RBP11.94□□□□□ -0.5
SKA1-202ENST00000398452 DEFB108BQ8NET1 73 aa11.94□□□□□ -0.5
SKA1-202ENST00000398452 PECRQ9BY49 303 aa11.94□□□□□ -0.5
SKA1-202ENST00000398452 AUNIPQ9H7T9 357 aa11.94□□□□□ -0.5
SKA1-202ENST00000398452 ZMAT3Q9HA38 289 aaKnown RBP11.94□□□□□ -0.5
SKA1-202ENST00000398452 SCPEP1Q9HB40 452 aa11.94□□□□□ -0.5
SKA1-202ENST00000398452 CHMP1AQ9HD42 196 aaPredicted RBP11.94□□□□□ -0.5
SKA1-202ENST00000398452 IFT46Q9NQC8 304 aa11.94□□□□□ -0.5
SKA1-202ENST00000398452 ROS1P08922 2347 aa11.94□□□□□ -0.5
SKA1-202ENST00000398452 IGHV3OR15-7A0A075B7D8 119 aa11.93□□□□□ -0.5
SKA1-202ENST00000398452 A0A0A6YYD4 124 aa11.93□□□□□ -0.5
SKA1-202ENST00000398452 ISPDA4D126 451 aa11.93□□□□□ -0.5
SKA1-202ENST00000398452 GABARAPH6UMI1 98 aa11.93□□□□□ -0.5
SKA1-202ENST00000398452 H7C1Q1 480 aa11.93□□□□□ -0.5
SKA1-202ENST00000398452 NDUFA2O43678 99 aa11.93□□□□□ -0.5
SKA1-202ENST00000398452 RBBP9O75884 186 aa11.93□□□□□ -0.5
SKA1-202ENST00000398452 OR2H2O95918 312 aa11.93□□□□□ -0.5
SKA1-202ENST00000398452 GSTT2BP0CG30 244 aa11.93□□□□□ -0.5
SKA1-202ENST00000398452 CHATP28329 748 aa11.93□□□□□ -0.5
SKA1-202ENST00000398452 PRDX2P32119 198 aa11.93□□□□□ -0.5
SKA1-202ENST00000398452 MDH2P40926 338 aaKnown RBP11.93□□□□□ -0.5
SKA1-202ENST00000398452 CBX5P45973 191 aa11.93□□□□□ -0.5
SKA1-202ENST00000398452 ACTBP60709 375 aa11.93□□□□□ -0.5
SKA1-202ENST00000398452 ACTG1P63261 375 aa11.93□□□□□ -0.5
SKA1-202ENST00000398452 RNASE12Q5GAN4 147 aaKnown RBP11.93□□□□□ -0.5
SKA1-202ENST00000398452 SLC36A1Q7Z2H8 476 aa11.93□□□□□ -0.5
SKA1-202ENST00000398452 C6orf201Q7Z4U5 140 aa11.93□□□□□ -0.5
SKA1-202ENST00000398452 MUC20Q8N307 709 aaPredicted RBP11.93□□□□□ -0.5
SKA1-202ENST00000398452 OR5T2Q8NGG2 359 aa11.93□□□□□ -0.5
SKA1-202ENST00000398452 CMSS1Q9BQ75 279 aaKnown RBP11.93□□□□□ -0.5
SKA1-202ENST00000398452 DPCDQ9BVM2 203 aaPredicted RBP11.93□□□□□ -0.5
SKA1-202ENST00000398452 SRRQ9GZT4 340 aa11.93□□□□□ -0.5
SKA1-202ENST00000398452 ZNF665Q9H7R5 613 aa11.93□□□□□ -0.5
SKA1-202ENST00000398452 CHODLQ9H9P2 273 aa11.93□□□□□ -0.5
SKA1-202ENST00000398452 IL36RNQ9UBH0 155 aa11.93□□□□□ -0.5
SKA1-202ENST00000398452 TACC2O95359 2948 aa11.93□□□□□ -0.5
SKA1-202ENST00000398452 UBE2QL1A1L167 161 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 FUOMA2VDF0 154 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 TMEM235A6NFC5 223 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 J3QRK9 145 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 HSPB6O14558 160 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 170.3 ms