RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 IFT22Q9H7X7 185 aa15.67■□□□□ 0.1
CLN3-206ENST00000360019 UTP20O75691 2785 aaKnown RBP15.67■□□□□ 0.1
CLN3-206ENST00000360019 TRAV24A0A0B4J272 114 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 UBE2QL1A1L167 161 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 LHBP01229 141 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 CD3DP04234 171 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 RCVRNP35243 200 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 SPIN3Q5JUX0 258 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 SFRP4Q6FHJ7 346 aaPredicted RBP15.66■□□□□ 0.1
CLN3-206ENST00000360019 MZT2BQ6NZ67 158 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 CCBE1Q6UXH8 406 aaPredicted RBP15.66■□□□□ 0.1
CLN3-206ENST00000360019 MEX3BQ6ZN04 569 aaKnown RBP15.66■□□□□ 0.1
CLN3-206ENST00000360019 GLCCI1Q86VQ1 547 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 TGIF2LYQ8IUE0 185 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 OR4D10Q8NGI6 311 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 OCSTAMPQ9BR26 566 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 C7orf50Q9BRJ6 194 aaKnown RBP15.66■□□□□ 0.1
CLN3-206ENST00000360019 HSPB6O14558 160 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 OR2H2O95918 312 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 ZNF44P15621 663 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 SLC6A1P30531 599 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 TESK1Q15569 626 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 OR52W1Q6IF63 320 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 TMEM229BQ8NBD8 167 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 SUMF2Q8NBJ7 301 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 OR4C16Q8NGL9 310 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 Q8TCH9 128 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 SNAPC3Q92966 411 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 ERGIC1Q969X5 290 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 SPACA1Q9HBV2 294 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 IFT46Q9NQC8 304 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 TREM2Q9NZC2 230 aa15.66■□□□□ 0.1
CLN3-206ENST00000360019 ZNF230Q9UIE0 474 aaPredicted RBP15.66■□□□□ 0.1
CLN3-206ENST00000360019 KLF2Q9Y5W3 355 aaPredicted RBP15.66■□□□□ 0.1
CLN3-206ENST00000360019 CENPXA8MT69 81 aa15.65■□□□□ 0.1
CLN3-206ENST00000360019 HS3ST1O14792 307 aa15.65■□□□□ 0.1
CLN3-206ENST00000360019 DEGS1O15121 323 aa15.65■□□□□ 0.1
CLN3-206ENST00000360019 TNFRSF1AP19438 455 aa15.65■□□□□ 0.1
CLN3-206ENST00000360019 HLA-DMAP28067 261 aa15.65■□□□□ 0.1
CLN3-206ENST00000360019 CEBPDP49716 269 aaPredicted RBP15.65■□□□□ 0.1
CLN3-206ENST00000360019 TAS2R19P59542 299 aa15.65■□□□□ 0.1
CLN3-206ENST00000360019 SNRPD2P62316 118 aaKnown RBP15.65■□□□□ 0.1
CLN3-206ENST00000360019 SMIM21Q3B7S5 101 aa15.65■□□□□ 0.1
CLN3-206ENST00000360019 BPIFB2Q8N4F0 458 aa15.65■□□□□ 0.1
CLN3-206ENST00000360019 ENKURQ8TC29 256 aa15.65■□□□□ 0.1
CLN3-206ENST00000360019 CMSS1Q9BQ75 279 aaKnown RBP15.65■□□□□ 0.1
CLN3-206ENST00000360019 SAP30LQ9HAJ7 183 aa15.65■□□□□ 0.1
CLN3-206ENST00000360019 OR14J1Q9UGF5 321 aa15.65■□□□□ 0.1
CLN3-206ENST00000360019 ZNF107Q9UII5 783 aaPredicted RBP15.65■□□□□ 0.1
CLN3-206ENST00000360019 PPP1R3CQ9UQK1 317 aa15.65■□□□□ 0.1
CLN3-206ENST00000360019 SIRPB1O00241 398 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 TPD52L2O43399 206 aaKnown RBP15.64■□□□□ 0.09
CLN3-206ENST00000360019 HAND1O96004 215 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 KNG1P01042 644 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 NAT1P18440 290 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 CBX5P45973 191 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 STEAP1BQ6NZ63 245 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 FIP1L1Q6UN15 594 aaKnown RBP15.64■□□□□ 0.09
CLN3-206ENST00000360019 Q6ZPA2 131 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 DEDD2Q8WXF8 326 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 MAFIPQ8WZ33 124 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 RDH5Q92781 318 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 DECR2Q9NUI1 292 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 DCAF16Q9NXF7 216 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 RASL12Q9NYN1 266 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 NLKQ9UBE8 527 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 RNF7Q9UBF6 113 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 PLEKHA6Q9Y2H5 1048 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 FAM240BA0A1B0GVZ2 78 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 FAM221AA4D161 298 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 A6NNC1 897 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 ZNF736B4DX44 427 aaPredicted RBP15.64■□□□□ 0.09
CLN3-206ENST00000360019 SLC33A1O00400 549 aaPredicted RBP15.64■□□□□ 0.09
CLN3-206ENST00000360019 TFF1P04155 84 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 CD74P04233 296 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 AKAIN1P0CW23 69 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 PLA1AQ53H76 456 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 FAM201AQ5SY85 155 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 HOGA1Q86XE5 327 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 BOLLQ8N9W6 283 aaKnown RBP15.64■□□□□ 0.09
CLN3-206ENST00000360019 DUSP18Q8NEJ0 188 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 ST6GALNAC5Q9BVH7 336 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 DPCDQ9BVM2 203 aaPredicted RBP15.64■□□□□ 0.09
CLN3-206ENST00000360019 EGLN1Q9GZT9 426 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 MMP28Q9H239 520 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 ZNF701Q9NV72 531 aaPredicted RBP15.64■□□□□ 0.09
CLN3-206ENST00000360019 NPTNQ9Y639 398 aa15.64■□□□□ 0.09
CLN3-206ENST00000360019 RFPL4AA6NLU0 287 aa15.63■□□□□ 0.09
CLN3-206ENST00000360019 MCRIP1C9JLW8 97 aa15.63■□□□□ 0.09
CLN3-206ENST00000360019 RFPL4AL1F8VTS6 287 aa15.63■□□□□ 0.09
CLN3-206ENST00000360019 H3BUI4 141 aa15.63■□□□□ 0.09
CLN3-206ENST00000360019 SH2D1BO14796 132 aa15.63■□□□□ 0.09
CLN3-206ENST00000360019 CYB5R3P00387 301 aaPredicted RBP15.63■□□□□ 0.09
CLN3-206ENST00000360019 DANCRP0C864 163 aa15.63■□□□□ 0.09
CLN3-206ENST00000360019 CCR6P51684 374 aa15.63■□□□□ 0.09
CLN3-206ENST00000360019 C11orf71Q6IPW1 123 aa15.63■□□□□ 0.09
CLN3-206ENST00000360019 OR5T2Q8NGG2 359 aa15.63■□□□□ 0.09
CLN3-206ENST00000360019 TINAGL1Q9GZM7 467 aaPredicted RBP15.63■□□□□ 0.09
CLN3-206ENST00000360019 C12orf4Q9NQ89 552 aa15.63■□□□□ 0.09
CLN3-206ENST00000360019 MCUBQ9NWR8 336 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 129.1 ms