RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 ZIC4Q8N9L1 334 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 CDRT4Q8N9R6 151 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 C19orf18Q8NEA5 215 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 OR9K2Q8NGE7 335 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 OR4A15Q8NGL6 344 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 OR5W2Q8NH69 310 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 TWIST2Q8WVJ9 160 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 TMEM186Q96B77 213 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 TMEM80Q96HE8 168 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 C16orf45Q96MC5 204 aaPredicted RBP1.9□□□□□ -2.11
SCFD1-219ENST00000556413 SDF2Q99470 211 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 KCNS3Q9BQ31 491 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 RHOXF2Q9BQY4 288 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 EMC6Q9BV81 110 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 REEP4Q9H6H4 257 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 CRLF2Q9HC73 371 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 NGBQ9NPG2 151 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 DAZ3Q9NR90 486 aaKnown RBP1.9□□□□□ -2.11
SCFD1-219ENST00000556413 MMP26Q9NRE1 261 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 UBQLN4Q9NRR5 601 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 CA10Q9NS85 328 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 MED29Q9NX70 200 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 PDP1Q9P0J1 537 aaPredicted RBP1.9□□□□□ -2.11
SCFD1-219ENST00000556413 CHRNA9Q9UGM1 479 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 PSG11Q9UQ72 335 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 UTP11Q9Y3A2 253 aaKnown RBP1.9□□□□□ -2.11
SCFD1-219ENST00000556413 WSB1Q9Y6I7 421 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 HERC2O95714 4834 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.9□□□□□ -2.11
SCFD1-219ENST00000556413 CADP27708 2225 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 TRAV40A0A0B4J280 105 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 A0A1W2PQD3 144 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 A0A1W2PRD5 423 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 A0A1W2PRF3 423 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 A0A1W2PRM7 423 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 GJE1A6NN92 205 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 DHRS7CA6NNS2 312 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 G3V4G9 280 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 KPNA4O00629 521 aaPredicted RBP1.89□□□□□ -2.11
SCFD1-219ENST00000556413 AZIN1O14977 448 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 ZSCAN12O43309 604 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 PLIN3O60664 434 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 MPZL1O95297 269 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 BCHEP06276 602 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 MSMBP08118 114 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 CSF3P09919 207 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 OR8U8P0C7N1 319 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 PABPC4LP0CB38 370 aaKnown RBP1.89□□□□□ -2.11
SCFD1-219ENST00000556413 PNMTP11086 282 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 IGLL1P15814 213 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 NPR2P20594 1047 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 IMPDH1P20839 514 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 CCNOP22674 350 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 PAX6P26367 422 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 ALDH3A1P30838 453 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 CASQ1P31415 396 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 PRDX2P32119 198 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 PHBP35232 272 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 CHI3L1P36222 383 aaPredicted RBP1.89□□□□□ -2.11
SCFD1-219ENST00000556413 MPV17P39210 176 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 MAP3K8P41279 467 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 EIF1P41567 113 aaKnown RBP1.89□□□□□ -2.11
SCFD1-219ENST00000556413 MAGEA8P43361 318 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 RPS5P46782 204 aaKnown RBP1.89□□□□□ -2.11
SCFD1-219ENST00000556413 ERFP50548 548 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 ARFIP1P53367 373 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 PRPS1P60891 318 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 RPL8P62917 257 aaKnown RBP1.89□□□□□ -2.11
SCFD1-219ENST00000556413 CCL8P80075 99 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 MRPS11P82912 194 aaKnown RBP1.89□□□□□ -2.11
SCFD1-219ENST00000556413 MYBPC1Q00872 1141 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 CHRNB3Q05901 458 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 BAMBIQ13145 260 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 NAB1Q13506 487 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 CEACAM16Q2WEN9 425 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 VPS26BQ4G0F5 336 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 CYBRD1Q53TN4 286 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 KLF17Q5JT82 389 aaPredicted RBP1.89□□□□□ -2.11
SCFD1-219ENST00000556413 CFAP157Q5JU67 520 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 FAM201AQ5SY85 155 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 IL23RQ5VWK5 629 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 ASPHD2Q6ICH7 369 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 BRD3OSQ6XYD6 125 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 CYS1Q717R9 158 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 C16orf62Q7Z3J2 963 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 C6orf120Q7Z4R8 191 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 KIR3DL3Q8N743 410 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 CCDC71LQ8N9Z2 235 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 FNDC5Q8NAU1 212 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 OR51F2Q8NH61 342 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 PIGXQ8TBF5 258 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 MARCH1Q8TCQ1 289 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 ZNF418Q8TF45 676 aaPredicted RBP1.89□□□□□ -2.11
SCFD1-219ENST00000556413 GEMIN6Q8WXD5 167 aaKnown RBP1.89□□□□□ -2.11
SCFD1-219ENST00000556413 MAL2Q969L2 176 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 ROPN1LQ96C74 230 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 TRIM44Q96DX7 344 aaPredicted RBP1.89□□□□□ -2.11
SCFD1-219ENST00000556413 L3HYPDHQ96EM0 354 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 SLC35E1Q96K37 410 aa1.89□□□□□ -2.11
SCFD1-219ENST00000556413 FCRL1Q96LA6 429 aa1.89□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 98.3 ms