RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 CTAG2O75638 210 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 SELEP16581 610 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 GIFP27352 417 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 MAD2L1BPQ15013 274 aaPredicted RBP6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 RAB35Q15286 201 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 SLC35D3Q5M8T2 416 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 EXOSC6Q5RKV6 272 aaKnown RBP6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 GGNBP1Q5YKI7 109 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 FDX2Q6P4F2 183 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 THSD4Q6ZMP0 1018 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 ZNF440Q8IYI8 595 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 OR5AS1Q8N127 324 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 OR51S1Q8NGJ8 323 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 ASB10Q8WXI3 467 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 DYNLRB1Q9NP97 96 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 PPIAL4AQ9Y536 164 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 A0A087WUU8 490 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 A0A0B4J2E0 115 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 A0A1B0GX12 115 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 CDC42EP2O14613 210 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 ENSAO43768 121 aaKnown RBP6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 SLC16A7O60669 478 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 OPN1MWP04001 364 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 OPN1MW2P0DN77 364 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 OPN1MW3P0DN78 364 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 PSMA1P25786 263 aaKnown RBP6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 HSD11B1P28845 292 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 GLP1RP43220 463 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 SLC6A9P48067 706 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 PRPS1P60891 318 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 PPP3R1P63098 170 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 SLC17A1Q14916 467 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 CNN3Q15417 329 aaKnown RBP6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 OLFML2AQ68BL7 652 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 SLC16A14Q7RTX9 510 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 CREB3L1Q96BA8 519 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 ZNF764Q96H86 408 aaPredicted RBP6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 ADGRG7Q96K78 797 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 SAMD8Q96LT4 415 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 DPAGT1Q9H3H5 408 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 HEXA-AS1Q9H8Q6 139 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 MED20Q9H944 212 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 PARPBPQ9NWS1 579 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 F5H0A9 414 aaPredicted RBP6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 TNFRSF11BO00300 401 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 PLA2G10O15496 165 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 PYCR1P32322 319 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 CD80P33681 288 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 HCCSP53701 268 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 ERVS71-1P61550 626 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 RAB1AP62820 205 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 RBBP4Q09028 425 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 PRR27Q6MZM9 219 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 FAAP20Q6NZ36 180 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 CNIH2Q6PI25 160 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 BTNL3Q6UXE8 466 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 BATF2Q8N1L9 274 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 PRDM13Q9H4Q3 707 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 TMEM38AQ9H6F2 299 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 CCNB1IP1Q9NPC3 277 aa6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 TESQ9UGI8 421 aaKnown RBP6.84□□□□□ -1.31
LIMCH1-219ENST00000514096 F5H5K5 113 aa6.84□□□□□ -1.32
LIMCH1-219ENST00000514096 PRODHO43272 600 aa6.84□□□□□ -1.32
LIMCH1-219ENST00000514096 RPP14O95059 124 aaKnown RBP6.84□□□□□ -1.32
LIMCH1-219ENST00000514096 FABP3P05413 133 aa6.84□□□□□ -1.32
LIMCH1-219ENST00000514096 ZNF17P17021 662 aa6.84□□□□□ -1.32
LIMCH1-219ENST00000514096 SUMO3P55854 103 aaPredicted RBP6.84□□□□□ -1.32
LIMCH1-219ENST00000514096 GGTLC2Q14390 218 aa6.84□□□□□ -1.32
LIMCH1-219ENST00000514096 KCNMB1Q16558 191 aa6.84□□□□□ -1.32
LIMCH1-219ENST00000514096 FAM89BQ8N5H3 189 aa6.84□□□□□ -1.32
LIMCH1-219ENST00000514096 TMEM171Q8WVE6 324 aa6.84□□□□□ -1.32
LIMCH1-219ENST00000514096 GEMIN6Q8WXD5 167 aaKnown RBP6.84□□□□□ -1.32
LIMCH1-219ENST00000514096 ANAPC16Q96DE5 110 aa6.84□□□□□ -1.32
LIMCH1-219ENST00000514096 SDHCQ99643 169 aaPredicted RBP6.84□□□□□ -1.32
LIMCH1-219ENST00000514096 CSTL1Q9H114 145 aa6.84□□□□□ -1.32
LIMCH1-219ENST00000514096 PLSCR4Q9NRQ2 329 aa6.84□□□□□ -1.32
LIMCH1-219ENST00000514096 CLEC2DQ9UHP7 191 aa6.84□□□□□ -1.32
LIMCH1-219ENST00000514096 KANTRA0A1W2PQU2 76 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 TCRBV3S1A0A5B6 114 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 DPRXA6NFQ7 191 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 FFAR1O14842 300 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 CRYAAP02489 173 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 CST2P09228 141 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 SDC2P34741 201 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 ADARB1P78563 741 aaKnown RBP6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 SRSF2Q01130 221 aaKnown RBP6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 GFI1BQ5VTD9 330 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 MYPOPQ86VE0 399 aaPredicted RBP6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 OR1S2Q8NGQ3 325 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 TNFAIP8L1Q8WVP5 186 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 YIPF6Q96EC8 236 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 REEP6Q96HR9 211 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 NMNAT3Q96T66 252 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 ATF6BQ99941 703 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 BCL2L10Q9HD36 194 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 OR2S2Q9NQN1 319 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 NCOA6Q14686 2063 aaPredicted RBP6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 A0A0D9SG52 128 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 ZNF716A6NP11 495 aa6.83□□□□□ -1.32
LIMCH1-219ENST00000514096 SYT5O00445 386 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms