RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 IGFBP4P22692 258 aa9□□□□□ -0.97
VPS39-214ENST00000614932 APOBEC1P41238 236 aaKnown RBP9□□□□□ -0.97
VPS39-214ENST00000614932 PRRX1P54821 245 aa9□□□□□ -0.97
VPS39-214ENST00000614932 ARHGAP11BQ3KRB8 267 aa9□□□□□ -0.97
VPS39-214ENST00000614932 ZNF627Q7L945 461 aa9□□□□□ -0.97
VPS39-214ENST00000614932 TGIF2LYQ8IUE0 185 aa9□□□□□ -0.97
VPS39-214ENST00000614932 OR2L13Q8N349 312 aa9□□□□□ -0.97
VPS39-214ENST00000614932 RPS4Y2Q8TD47 263 aa9□□□□□ -0.97
VPS39-214ENST00000614932 TMEM37Q8WXS4 190 aa9□□□□□ -0.97
VPS39-214ENST00000614932 YPEL2Q96QA6 119 aa9□□□□□ -0.97
VPS39-214ENST00000614932 TXN2Q99757 166 aa9□□□□□ -0.97
VPS39-214ENST00000614932 KLHDC3Q9BQ90 382 aa9□□□□□ -0.97
VPS39-214ENST00000614932 CTDSP1Q9GZU7 261 aa9□□□□□ -0.97
VPS39-214ENST00000614932 RYDENQ9NUL5 291 aaKnown RBP9□□□□□ -0.97
VPS39-214ENST00000614932 SMPXQ9UHP9 88 aa9□□□□□ -0.97
VPS39-214ENST00000614932 DMDP11532 3685 aa9□□□□□ -0.97
VPS39-214ENST00000614932 NPIPA5A0A0B4J1W7 369 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 GYPBP06028 91 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 MC5RP33032 325 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 LTBRP36941 435 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 SOX2P48431 317 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 GNB2P62879 340 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 CCL20P78556 96 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 RHOGP84095 191 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 IL15RAQ13261 267 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 VAMP3Q15836 100 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 C2orf76Q3KRA6 126 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 TPTE2P1Q5T6R2 138 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 Q6ZSR6 202 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 BHLHA15Q7RTS1 189 aaPredicted RBP8.99□□□□□ -0.97
VPS39-214ENST00000614932 WFDC8Q8IUA0 241 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 NUP43Q8NFH3 380 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 OR13H1Q8NG92 308 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 TMEM255BQ8WV15 326 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 IMMP2LQ96T52 175 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 GABRG3Q99928 467 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 PYGO2Q9BRQ0 406 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 SLC13A4Q9UKG4 626 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 MUC3AQ02505 3323 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 WDR87Q6ZQQ6 2873 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 A0A1B0GV72 72 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 MED19A0JLT2 244 aaPredicted RBP8.99□□□□□ -0.97
VPS39-214ENST00000614932 CDC14CA4D256 554 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 HCRTR1O43613 425 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 RPS4Y1P22090 263 aaKnown RBP8.99□□□□□ -0.97
VPS39-214ENST00000614932 FXYD6P3P58550 94 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 RBPJQ06330 500 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 SPEM2Q0P670 501 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 ZIC1Q15915 447 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 SNAI3Q3KNW1 292 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 TMEM128Q5BJH2 165 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 SLC16A11Q8NCK7 471 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 OR10S1Q8NGN2 331 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 APH1AQ96BI3 265 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 TMEM9BQ9NQ34 198 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 TMEM106BQ9NUM4 274 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 KIAA1456Q9P272 454 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 KLK13Q9UKR3 277 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 LIPGQ9Y5X9 500 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 ZNF814B7Z6K7 855 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 ONECUT2O95948 504 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 ZNF708P17019 499 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 FRKP42685 505 aaPredicted RBP8.99□□□□□ -0.97
VPS39-214ENST00000614932 BIDP55957 195 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 NANOS3P60323 173 aaKnown RBP8.99□□□□□ -0.97
VPS39-214ENST00000614932 ICAM4Q14773 271 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 SLC35F2Q8IXU6 374 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 OR4S2Q8NH73 311 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 IL22RA2Q969J5 263 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 FAM3DQ96BQ1 224 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 KTI12Q96EK9 354 aaPredicted RBP8.99□□□□□ -0.97
VPS39-214ENST00000614932 OR7D2Q96RA2 312 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 ALG12Q9BV10 488 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 MRPL22Q9NWU5 206 aaKnown RBP8.99□□□□□ -0.97
VPS39-214ENST00000614932 KLHL28Q9NXS3 571 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 BET1LQ9NYM9 111 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 LAMP3Q9UQV4 416 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 C14orf166Q9Y224 244 aaKnown RBP8.99□□□□□ -0.97
VPS39-214ENST00000614932 ZNF780BQ9Y6R6 833 aa8.99□□□□□ -0.97
VPS39-214ENST00000614932 CENPVL1A0A0U1RR11 272 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 K7N7A8 449 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 CORTO00230 105 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 CT45A8P0DMV1 189 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 CT45A9P0DMV2 189 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 FAHP16930 419 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 GABRG2P18507 467 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 CSNK2A2P19784 350 aaPredicted RBP8.98□□□□□ -0.97
VPS39-214ENST00000614932 P2RY1P47900 373 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 FAM3BP58499 235 aaPredicted RBP8.98□□□□□ -0.97
VPS39-214ENST00000614932 TMEM176BQ3YBM2 270 aaPredicted RBP8.98□□□□□ -0.97
VPS39-214ENST00000614932 CT45A2Q5DJT8 189 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 ZNF506Q5JVG8 444 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 SLC48A1Q6P1K1 146 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 OR8G5Q8NG78 346 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 GRHL3Q8TE85 626 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 ZMYND19Q96E35 227 aaPredicted RBP8.98□□□□□ -0.97
VPS39-214ENST00000614932 ARHGDIGQ99819 225 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 KCNK15Q9H427 330 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 PLK3Q9H4B4 646 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 BCL2L10Q9HD36 194 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms