RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 DAP3P51398 398 aaKnown RBP4.69□□□□□ -1.66
SYNE1-220ENST00000471834 SELENOTP62341 195 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 LCN6P62502 163 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 MDGA2Q7Z553 956 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 HINT2Q9BX68 163 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 SRD5A3Q9H8P0 318 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 A0A0J9YY10 115 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 OIP5O43482 229 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 SFTA3P0C7M3 94 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 DAOP14920 347 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 SLC6A8P48029 635 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 Q6ZPA2 131 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 GNB4Q9HAV0 340 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 FGF22Q9HCT0 170 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP4.68□□□□□ -1.66
SYNE1-220ENST00000471834 GJE1A6NN92 205 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 ENSAO43768 121 aaKnown RBP4.68□□□□□ -1.66
SYNE1-220ENST00000471834 DBHP09172 617 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 MYF5P13349 255 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 ZNF28P17035 718 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 MAOAP21397 527 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 GCH1P30793 250 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 DEFB103AP81534 67 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 SSPNQ14714 243 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 TMEM241Q24JQ0 296 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 AKR1C8PQ5T2L2 129 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 RPL7L1Q6DKI1 246 aaKnown RBP4.68□□□□□ -1.66
SYNE1-220ENST00000471834 OR51G1Q8NGK1 321 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 PIGCQ92535 297 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 NOL4LQ96MY1 436 aaPredicted RBP4.68□□□□□ -1.66
SYNE1-220ENST00000471834 MRPL37Q9BZE1 423 aaKnown RBP4.68□□□□□ -1.66
SYNE1-220ENST00000471834 CRISPLD2Q9H0B8 497 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 WFDC1Q9HC57 220 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 SERTAD4Q9NUC0 356 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 RCL1Q9Y2P8 373 aaKnown RBP4.68□□□□□ -1.66
SYNE1-220ENST00000471834 MMACHCQ9Y4U1 282 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 TMEM50AO95807 157 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 LCATP04180 440 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 SERPINA7P05543 415 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 GDF1P27539 372 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 SLC37A1P57057 533 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 RPS20P60866 119 aaKnown RBP4.68□□□□□ -1.66
SYNE1-220ENST00000471834 MSMO1Q15800 293 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 RSPO1Q2MKA7 263 aaPredicted RBP4.68□□□□□ -1.66
SYNE1-220ENST00000471834 C20orf196Q8IYI0 205 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 SCCPDHQ8NBX0 429 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 ULBP3Q9BZM4 244 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 SERGEFQ9UGK8 458 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 ANKRD12Q6UB98 2062 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 A0A0U1RQV5 110 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 HIDE1A8MVS5 230 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 NAPSAO96009 420 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 HLA-AP01891 365 aaKnown RBP4.68□□□□□ -1.66
SYNE1-220ENST00000471834 MYOGP15173 224 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 CD1BP29016 333 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 RPL27P61353 136 aaKnown RBP4.68□□□□□ -1.66
SYNE1-220ENST00000471834 ELOBQ15370 118 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 CD226Q15762 336 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 SLC22A24Q8N4F4 322 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 OR51F2Q8NH61 342 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 IL1F10Q8WWZ1 152 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 DAZLQ92904 295 aaKnown RBP4.68□□□□□ -1.66
SYNE1-220ENST00000471834 TOMM40LQ969M1 308 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 DIRC2Q96SL1 478 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 LIME1Q9H400 295 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 CKAP5Q14008 2032 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 OR8U9P0C7N5 309 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 LINC00614P0C842 121 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 ADH6P28332 368 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 MRPS11P82912 194 aaKnown RBP4.68□□□□□ -1.66
SYNE1-220ENST00000471834 PAX5Q02548 391 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 GUCA2AQ02747 115 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 KCNIP4Q6PIL6 250 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 OR5D14Q8NGL3 314 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 OR8U1Q8NH10 309 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 FRZBQ92765 325 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 OR6C1Q96RD1 312 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 ZFYVE21Q9BQ24 234 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 CTDSP1Q9GZU7 261 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 OR14J1Q9UGF5 321 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 A0A0A6YYD4 124 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 MDFIC2A0A1B0GVS7 189 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 CRYM-AS1A6NIL9 109 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 PLRG1O43660 514 aaKnown RBP4.68□□□□□ -1.66
SYNE1-220ENST00000471834 SOX15O60248 233 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 REG1AP05451 166 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 CTLA4P16410 223 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 DDTP30046 118 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 BAXQ07812 192 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.68□□□□□ -1.66
SYNE1-220ENST00000471834 BTNL3Q6UXE8 466 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 TCTEX1D2Q8WW35 142 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 HRH4Q9H3N8 390 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 NIT2Q9NQR4 276 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 OR5AC2Q9NZP5 309 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 B3GAT1Q9P2W7 334 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 ZNF230Q9UIE0 474 aaPredicted RBP4.68□□□□□ -1.66
SYNE1-220ENST00000471834 FBXO7Q9Y3I1 522 aa4.68□□□□□ -1.66
SYNE1-220ENST00000471834 TRAV36DV7A0A075B6V5 113 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 A0A0A6YYC8 382 aaPredicted RBP4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms