RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 PGLYRP3Q96LB9 341 aa9.85□□□□□ -0.83
VPS52-213ENST00000461743 CEP19Q96LK0 163 aa9.85□□□□□ -0.83
VPS52-213ENST00000461743 GAFA1Q96PS6 74 aa9.85□□□□□ -0.83
VPS52-213ENST00000461743 DUSP21Q9H596 190 aa9.85□□□□□ -0.83
VPS52-213ENST00000461743 SEBOXQ9HB31 216 aaPredicted RBP9.85□□□□□ -0.83
VPS52-213ENST00000461743 SMURF1Q9HCE7 757 aa9.85□□□□□ -0.83
VPS52-213ENST00000461743 MMP26Q9NRE1 261 aa9.85□□□□□ -0.83
VPS52-213ENST00000461743 AUP1Q9Y679 476 aa9.85□□□□□ -0.83
VPS52-213ENST00000461743 IGKV1D-17A0A075B6S4 117 aa9.84□□□□□ -0.83
VPS52-213ENST00000461743 TRBV5-5A0A0J9YX44 114 aa9.84□□□□□ -0.83
VPS52-213ENST00000461743 C22orf46C9J442 243 aa9.84□□□□□ -0.83
VPS52-213ENST00000461743 PSG2P11465 335 aa9.84□□□□□ -0.83
VPS52-213ENST00000461743 ADRA2CP18825 462 aa9.84□□□□□ -0.83
VPS52-213ENST00000461743 FSTP19883 344 aa9.84□□□□□ -0.83
VPS52-213ENST00000461743 RAB3AP20336 220 aa9.84□□□□□ -0.83
VPS52-213ENST00000461743 MAPK3P27361 379 aaPredicted RBP9.84□□□□□ -0.83
VPS52-213ENST00000461743 MTCP1P56278 107 aa9.84□□□□□ -0.83
VPS52-213ENST00000461743 Q499Y3 187 aa9.84□□□□□ -0.83
VPS52-213ENST00000461743 DMRTC1Q5HYR2 192 aa9.84□□□□□ -0.83
VPS52-213ENST00000461743 PRSS48Q7RTY5 328 aa9.84□□□□□ -0.83
VPS52-213ENST00000461743 ZNF561Q8N587 486 aa9.84□□□□□ -0.83
VPS52-213ENST00000461743 KIR3DL3Q8N743 410 aa9.84□□□□□ -0.83
VPS52-213ENST00000461743 FAM216BQ8N7L0 139 aa9.84□□□□□ -0.83
VPS52-213ENST00000461743 ZSCAN4Q8NAM6 433 aaPredicted RBP9.84□□□□□ -0.83
VPS52-213ENST00000461743 ST8SIA4Q92187 359 aa9.84□□□□□ -0.83
VPS52-213ENST00000461743 TMEM106AQ96A25 262 aa9.84□□□□□ -0.83
VPS52-213ENST00000461743 UPRTQ96BW1 309 aa9.84□□□□□ -0.83
VPS52-213ENST00000461743 CCL13Q99616 98 aa9.84□□□□□ -0.83
VPS52-213ENST00000461743 OPN4Q9UHM6 478 aa9.84□□□□□ -0.83
VPS52-213ENST00000461743 LSM2Q9Y333 95 aaKnown RBP9.84□□□□□ -0.83
VPS52-213ENST00000461743 TRBV23-1A0A0A0MS06 115 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 BOLA2-SMG1P6H3BVE0 249 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 MAGEB3O15480 346 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 RGS10O43665 173 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 MRPS14O60783 128 aaKnown RBP9.83□□□□□ -0.84
VPS52-213ENST00000461743 HCKP08631 526 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 CRHBPP24387 322 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 POU3F4P49335 361 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 BMXP51813 675 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 GABARAPL2P60520 117 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 PPP3R1P63098 170 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 PDZK1IP1Q13113 114 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 GPR50Q13585 617 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 IRF3Q14653 427 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 SPIN3Q5JUX0 258 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 C1orf229Q6ZS94 237 aaPredicted RBP9.83□□□□□ -0.84
VPS52-213ENST00000461743 SLC25A26Q70HW3 274 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 BTN2A1Q7KYR7 527 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 GPR141Q7Z602 305 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 ANGPTL5Q86XS5 388 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 GHSRQ92847 366 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 SEH1LQ96EE3 360 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 FAM234AQ9H0X4 552 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 SNTG1Q9NSN8 517 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 PAK1IP1Q9NWT1 392 aaPredicted RBP9.83□□□□□ -0.84
VPS52-213ENST00000461743 MTCH1Q9NZJ7 389 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 CKLFQ9UBR5 152 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 SLC25A10Q9UBX3 287 aaPredicted RBP9.83□□□□□ -0.84
VPS52-213ENST00000461743 METRNQ9UJH8 293 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 RPUSD1Q9UJJ7 312 aaKnown RBP9.83□□□□□ -0.84
VPS52-213ENST00000461743 KPTNQ9Y664 436 aa9.83□□□□□ -0.84
VPS52-213ENST00000461743 SIRT4Q9Y6E7 314 aaPredicted RBP9.83□□□□□ -0.84
VPS52-213ENST00000461743 COL6A5A8TX70 2615 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 A0A087WXM4 84 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 A0A0A6YYJ9 748 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 ZNF879B4DU55 563 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 PTGES3LE9PB15 166 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 FCN3O75636 299 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 GPX5O75715 221 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 KDM4BO94953 1096 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 AVPP01185 164 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 ALDOBP05062 364 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 AMY2BP19961 511 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 EPHA1P21709 976 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 GABRA2P47869 451 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 BPIFB3P59826 476 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 GMFBP60983 142 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 SPHARQ15513 63 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 KISS1Q15726 138 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 TBCEQ15813 527 aaPredicted RBP9.82□□□□□ -0.84
VPS52-213ENST00000461743 METTL11BQ5VVY1 283 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 PRIMA1Q86XR5 153 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 MS4A15Q8N5U1 240 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 LY6G5BQ8NDX9 201 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 EMG1Q92979 244 aaKnown RBP9.82□□□□□ -0.84
VPS52-213ENST00000461743 SLAMF9Q96A28 289 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 ZNF488Q96MN9 340 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 DCTN5Q9BTE1 182 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 ISYNA1Q9NPH2 558 aa9.82□□□□□ -0.84
VPS52-213ENST00000461743 A0A1B0GW55 424 aa9.81□□□□□ -0.84
VPS52-213ENST00000461743 RFPL4AA6NLU0 287 aa9.81□□□□□ -0.84
VPS52-213ENST00000461743 RFPL4AL1F8VTS6 287 aa9.81□□□□□ -0.84
VPS52-213ENST00000461743 PLATP00750 562 aa9.81□□□□□ -0.84
VPS52-213ENST00000461743 DUX4L2P0CJ85 424 aa9.81□□□□□ -0.84
VPS52-213ENST00000461743 DUX4L3P0CJ86 424 aa9.81□□□□□ -0.84
VPS52-213ENST00000461743 DUX4L4P0CJ87 422 aa9.81□□□□□ -0.84
VPS52-213ENST00000461743 DUX4L5P0CJ88 424 aa9.81□□□□□ -0.84
VPS52-213ENST00000461743 DUX4L6P0CJ89 424 aa9.81□□□□□ -0.84
VPS52-213ENST00000461743 DUX4L7P0CJ90 424 aa9.81□□□□□ -0.84
VPS52-213ENST00000461743 IGFBP3P17936 291 aaPredicted RBP9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms