RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 RFX3P48380 749 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 RORCP51449 518 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 WNT4P56705 351 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 ACTBP60709 375 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 RPS20P60866 119 aaKnown RBP3.94□□□□□ -1.78
SF3B1-202ENST00000409915 PRPS1P60891 318 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 LSM6P62312 80 aaKnown RBP3.94□□□□□ -1.78
SF3B1-202ENST00000409915 ARF6P62330 175 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 ACTA2P62736 377 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 ACTG1P63261 375 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 ACTG2P63267 376 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 ACTC1P68032 377 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 ACTA1P68133 377 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 BLOC1S1P78537 153 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 HSF1Q00613 529 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 DEFA5Q01523 94 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 PLCXD2Q0VAA5 305 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 PNRC1Q12796 327 aaPredicted RBP3.94□□□□□ -1.78
SF3B1-202ENST00000409915 MYBPHQ13203 477 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 DGCR6Q14129 220 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 PEA15Q15121 130 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 TAF13Q15543 124 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 LINC01620Q4KN68 170 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 ACTBL2Q562R1 376 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 C6orf226Q5I0X4 101 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 TMEM255AQ5JRV8 349 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 SPANXN4Q5MJ08 99 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 CPTPQ5TA50 214 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 C1QL3Q5VWW1 255 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 LPCAT3Q6P1A2 487 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 ULK3Q6PHR2 472 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 ZNF841Q6ZN19 808 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 RANBP3LQ86VV4 465 aaPredicted RBP3.94□□□□□ -1.78
SF3B1-202ENST00000409915 LRRC28Q86X40 367 aaPredicted RBP3.94□□□□□ -1.78
SF3B1-202ENST00000409915 PTOV1Q86YD1 416 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 CDK20Q8IZL9 346 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 SELENOHQ8IZQ5 122 aaKnown RBP3.94□□□□□ -1.78
SF3B1-202ENST00000409915 CLECL1Q8IZS7 167 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 OR2L13Q8N349 312 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 PNLDC1Q8NA58 520 aaKnown RBP3.94□□□□□ -1.78
SF3B1-202ENST00000409915 TMEM178AQ8NBL3 297 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 HSD17B11Q8NBQ5 300 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 C19orf18Q8NEA5 215 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 PROKR2Q8NFJ6 384 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 PXT1Q8NFP0 134 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 OR5L2Q8NGL0 311 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 OR9I1Q8NGQ6 314 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 OR6K3Q8NGY3 331 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 OR5J2Q8NH18 312 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 OR5AK3PQ8NH89 298 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 TMEM163Q8TC26 289 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 NEK7Q8TDX7 302 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 CACNG8Q8WXS5 425 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 AP3S1Q92572 193 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 NRGNQ92686 78 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 LHX4Q969G2 390 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 MRGPRFQ96AM1 343 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 PHYHIPLQ96FC7 376 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 OR2A7Q96R45 310 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 C7orf50Q9BRJ6 194 aaKnown RBP3.94□□□□□ -1.78
SF3B1-202ENST00000409915 THAP7Q9BT49 309 aaPredicted RBP3.94□□□□□ -1.78
SF3B1-202ENST00000409915 CDCA4Q9BXL8 241 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 SEC11CQ9BY50 192 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 DPY30Q9C005 99 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 NPFFR1Q9GZQ6 430 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 SLC38A1Q9H2H9 487 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 OR51J1Q9H342 316 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 PTGES2Q9H7Z7 377 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 FKRPQ9H9S5 495 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 TMEM138Q9NPI0 162 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 SLC52A3Q9NQ40 469 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 EXOSC3Q9NQT5 275 aaKnown RBP3.94□□□□□ -1.78
SF3B1-202ENST00000409915 SMCO4Q9NRQ5 59 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 AIG1Q9NVV5 245 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 ASIC5Q9NY37 505 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 CALML5Q9NZT1 146 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 FLRT3Q9NZU0 649 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 RPH3ALQ9UNE2 315 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 RASD1Q9Y272 281 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 STARD10Q9Y365 291 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 WDR45Q9Y484 360 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 CHST2Q9Y4C5 530 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 CHCHD2Q9Y6H1 151 aaPredicted RBP3.94□□□□□ -1.78
SF3B1-202ENST00000409915 SHANK1Q9Y566 2161 aa3.94□□□□□ -1.78
SF3B1-202ENST00000409915 FLNCQ14315 2725 aa3.93□□□□□ -1.78
SF3B1-202ENST00000409915 SVILO95425 2214 aa3.93□□□□□ -1.78
SF3B1-202ENST00000409915 PPIAL4EA0A075B759 164 aa3.93□□□□□ -1.78
SF3B1-202ENST00000409915 TMEM72A0PK05 275 aa3.93□□□□□ -1.78
SF3B1-202ENST00000409915 OR2M5A3KFT3 312 aa3.93□□□□□ -1.78
SF3B1-202ENST00000409915 ASPDHA6ND91 283 aa3.93□□□□□ -1.78
SF3B1-202ENST00000409915 FABP12A6NFH5 140 aa3.93□□□□□ -1.78
SF3B1-202ENST00000409915 FRG2CA6NGY1 282 aa3.93□□□□□ -1.78
SF3B1-202ENST00000409915 LRRC3CA6NJW4 275 aa3.93□□□□□ -1.78
SF3B1-202ENST00000409915 DISC1C4P0D8 188 aa3.93□□□□□ -1.78
SF3B1-202ENST00000409915 FAM90A26D6RGX4 464 aa3.93□□□□□ -1.78
SF3B1-202ENST00000409915 E5RGE8 158 aa3.93□□□□□ -1.78
SF3B1-202ENST00000409915 NPIPA5E9PKD4 350 aa3.93□□□□□ -1.78
SF3B1-202ENST00000409915 P2RY10O00398 339 aa3.93□□□□□ -1.78
SF3B1-202ENST00000409915 HSPB6O14558 160 aa3.93□□□□□ -1.78
SF3B1-202ENST00000409915 RRHO14718 337 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms