RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 ZNF385CQ66K41 422 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-203ENST00000396595 MBD1Q9UIS9 605 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-203ENST00000396595 SPTY2D1-AS1A0A0U1RR47 76 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 LMO7DNF2Z398 122 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 TSPAN13O95857 204 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 HPP00738 406 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 FAM87AP0C7U9 286 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 OR3A1P47881 315 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 GNG3P63215 75 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 OR4C3Q8NH37 302 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 CLDN23Q96B33 292 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 ALKBH3Q96Q83 286 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 COL22A1Q8NFW1 1626 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 F5P12259 2224 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 GSTZ1O43708 216 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 NPY1RP25929 384 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 PTGFRP43088 359 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 SLC37A1P57057 533 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 ZNF816Q0VGE8 651 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 MYBPHQ13203 477 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 FAM219BQ5XKK7 198 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 FAHD2BQ6P2I3 314 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 LINC00518Q8N0U6 118 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 C17orf47Q8NEP4 570 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 FAHD2AQ96GK7 314 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 POM121L2Q96KW2 1035 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 SNX22Q96L94 193 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 ZNF426Q9BUY5 554 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 PHF7Q9BWX1 381 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 SEC11CQ9BY50 192 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 PKIBQ9C010 78 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 BARX1Q9HBU1 254 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 NRAPQ86VF7 1730 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 RP1L1Q8IWN7 2480 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 ST8SIA5O15466 376 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 SOX15O60248 233 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 OPN1MWP04001 364 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 CRYBA1P05813 215 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 OPN1MW2P0DN77 364 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 OPN1MW3P0DN78 364 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 ZNF117Q03924 483 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 TMEM267Q0VDI3 215 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 FAM109BQ6ICB4 259 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 LIMS2Q7Z4I7 341 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 C10orf126Q8N4M7 172 aa9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 ZC3HAV1LQ96H79 300 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-203ENST00000396595 TTC3P53804 2025 aa9.15□□□□□ -0.95
LIMCH1-203ENST00000396595 IFITM10A6NMD0 228 aa9.15□□□□□ -0.95
LIMCH1-203ENST00000396595 PRRG2O14669 202 aa9.15□□□□□ -0.95
LIMCH1-203ENST00000396595 DHRS3O75911 302 aa9.15□□□□□ -0.95
LIMCH1-203ENST00000396595 CD200P41217 278 aa9.15□□□□□ -0.95
LIMCH1-203ENST00000396595 SULT1A1P50225 295 aa9.15□□□□□ -0.95
LIMCH1-203ENST00000396595 TMEM241Q24JQ0 296 aa9.15□□□□□ -0.95
LIMCH1-203ENST00000396595 SAPCD1Q5SSQ6 148 aa9.15□□□□□ -0.95
LIMCH1-203ENST00000396595 BHLHA9Q7RTU4 235 aa9.15□□□□□ -0.95
LIMCH1-203ENST00000396595 STPG2Q8N412 459 aa9.15□□□□□ -0.95
LIMCH1-203ENST00000396595 ZNF764Q96H86 408 aaPredicted RBP9.15□□□□□ -0.95
LIMCH1-203ENST00000396595 CITED2Q99967 270 aaPredicted RBP9.15□□□□□ -0.95
LIMCH1-203ENST00000396595 FAM206AQ9NX38 181 aa9.15□□□□□ -0.95
LIMCH1-203ENST00000396595 TBX21Q9UL17 535 aa9.15□□□□□ -0.95
LIMCH1-203ENST00000396595 ATP23Q9Y6H3 246 aa9.15□□□□□ -0.95
LIMCH1-203ENST00000396595 KIAA0100Q14667 2235 aaKnown RBP9.15□□□□□ -0.95
LIMCH1-203ENST00000396595 CDRT15L2A8MXV6 281 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 LMX1BO60663 402 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 HINT1P49773 126 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 DMKNQ6E0U4 476 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 TRILQ7L0X0 811 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 SLC26A10Q8NG04 563 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 PRSS3P2Q8NHM4 247 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 NAA60Q9H7X0 242 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 SSC5DA1L4H1 1573 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 TMIGD3P0DMS9 266 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 CRISP2P16562 243 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 CBLN2Q8IUK8 224 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 FAM216AQ8WUB2 273 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 TBX15Q96SF7 602 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 BMP5P22003 454 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 FAM3AP98173 230 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 NHLRC1Q6VVB1 395 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 SPAG8Q99932 426 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 ZNF275Q9NSD4 429 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 NINQ8N4C6 2090 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 PIAS2O75928 621 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 CA2P00918 260 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 THSD4Q6ZMP0 1018 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 ZNF683Q8IZ20 524 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 OR2C3Q8N628 320 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 BVESQ8NE79 360 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 ASCC3Q8N3C0 2202 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 DUXBA0A1W2PPF3 345 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 MAP1LC3B2A6NCE7 125 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 ONECUT2O95948 504 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 ERVS71-1P61550 626 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 C19orf57Q0VDD7 668 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 PRDX4Q13162 271 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 TCTN1Q2MV58 587 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 PRICKLE4Q2TBC4 344 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 HLA-DRB5Q30154 266 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 DMRTC1Q5HYR2 192 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 JMJD6Q6NYC1 403 aaPredicted RBP9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 175.7 ms