RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 CMC2Q9NRP2 79 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 P2RX2Q9UBL9 471 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 CTSBP07858 339 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 GLRA1P23415 457 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 EPHA8P29322 1005 aaPredicted RBP9.02□□□□□ -0.97
VPS39-214ENST00000614932 RIPPLY3P57055 190 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 IL24Q13007 206 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 ABHD17CQ6PCB6 329 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 DIO2Q92813 273 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 MRGPRFQ96AM1 343 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 BMFQ96LC9 184 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 TUBG2Q9NRH3 451 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 TICRRQ7Z2Z1 1910 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 ARHGEF17Q96PE2 2063 aaPredicted RBP9.02□□□□□ -0.97
VPS39-214ENST00000614932 CDC42EP2O14613 210 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 CLEC3AO75596 197 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 C1QL1O75973 258 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 STK17BO94768 372 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 PDGFBP01127 241 aaPredicted RBP9.02□□□□□ -0.97
VPS39-214ENST00000614932 F3P13726 295 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 NID1P14543 1247 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 TAS2R31P59538 309 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 RND3P61587 244 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 PPP1CAP62136 330 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 ZNF880Q6PDB4 577 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 KLHL24Q6TFL4 600 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 UNQ5815/PRO19632Q6UWF5 114 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 PRSS41Q7RTY9 318 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 CYB561D1Q8N8Q1 229 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 TMEM239Q8WW34 195 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 AQP3Q92482 292 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 DYRK2Q92630 601 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 PINX1Q96BK5 328 aaKnown RBP9.02□□□□□ -0.97
VPS39-214ENST00000614932 LOXL4Q96JB6 756 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 C2orf50Q96LR7 162 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 ZNF48Q96MX3 618 aaPredicted RBP9.02□□□□□ -0.97
VPS39-214ENST00000614932 S1PR5Q9H228 398 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 SLC5A6Q9Y289 635 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 LAMTOR2Q9Y2Q5 125 aa9.02□□□□□ -0.97
VPS39-214ENST00000614932 SPTBP11277 2137 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 CFAP54Q96N23 3096 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 M0R296 226 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 NUDT21O43809 227 aaKnown RBP9.01□□□□□ -0.97
VPS39-214ENST00000614932 OR2T7P0C7T2 308 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 PRDX4Q13162 271 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 AGERQ15109 404 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 Q6ZVH6 145 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 MDGA2Q7Z553 956 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 OR2T27Q8NH04 317 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 RLN3Q8WXF3 142 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 REEP6Q96HR9 211 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 TIMM29Q9BSF4 260 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 HIPK2Q9H2X6 1198 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 ELL3Q9HB65 397 aaPredicted RBP9.01□□□□□ -0.97
VPS39-214ENST00000614932 NEUROD4Q9HD90 331 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 P4HTMQ9NXG6 502 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 ADAM29Q9UKF5 820 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 TDRD6O60522 2096 aaKnown RBP9.01□□□□□ -0.97
VPS39-214ENST00000614932 A0A1B0GU03 582 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 VSTM2BA6NLU5 285 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 C9orf172C9J069 976 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 SYNGR4O95473 234 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 MAS1P04201 325 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 CMPK1P30085 196 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 COMPP49747 757 aaPredicted RBP9.01□□□□□ -0.97
VPS39-214ENST00000614932 FUT5Q11128 374 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 Q6ZS52 159 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 ZNF584Q8IVC4 421 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 D2HGDHQ8N465 521 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 FAM213BQ8TBF2 198 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 GPR146Q96CH1 333 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 MRPL13Q9BYD1 178 aaKnown RBP9.01□□□□□ -0.97
VPS39-214ENST00000614932 OR6C3Q9NZP0 311 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 FUT9Q9Y231 359 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.01□□□□□ -0.97
VPS39-214ENST00000614932 WSB1Q9Y6I7 421 aa9.01□□□□□ -0.97
VPS39-214ENST00000614932 LOC102724200A0A096LPH7 203 aaPredicted RBP9□□□□□ -0.97
VPS39-214ENST00000614932 BORCS7-ASMTA0A0B4J1R7 106 aa9□□□□□ -0.97
VPS39-214ENST00000614932 RIIAD1A6NNX1 92 aa9□□□□□ -0.97
VPS39-214ENST00000614932 RNF212BA8MTL3 300 aa9□□□□□ -0.97
VPS39-214ENST00000614932 FGF17O60258 216 aa9□□□□□ -0.97
VPS39-214ENST00000614932 LDB3O75112 727 aa9□□□□□ -0.97
VPS39-214ENST00000614932 TRAPPC6AO75865 159 aa9□□□□□ -0.97
VPS39-214ENST00000614932 HSPB1P04792 205 aaKnown RBP9□□□□□ -0.97
VPS39-214ENST00000614932 TNFSF4P23510 183 aa9□□□□□ -0.97
VPS39-214ENST00000614932 TNFRSF4P43489 277 aa9□□□□□ -0.97
VPS39-214ENST00000614932 PNRC1Q12796 327 aaPredicted RBP9□□□□□ -0.97
VPS39-214ENST00000614932 DEFB110Q30KQ9 67 aa9□□□□□ -0.97
VPS39-214ENST00000614932 ACOT6Q3I5F7 207 aaPredicted RBP9□□□□□ -0.97
VPS39-214ENST00000614932 Q499Y3 187 aa9□□□□□ -0.97
VPS39-214ENST00000614932 VN1R4Q7Z5H5 301 aa9□□□□□ -0.97
VPS39-214ENST00000614932 SELENOHQ8IZQ5 122 aaKnown RBP9□□□□□ -0.97
VPS39-214ENST00000614932 POC1AQ8NBT0 407 aa9□□□□□ -0.97
VPS39-214ENST00000614932 OR51A7Q8NH64 312 aa9□□□□□ -0.97
VPS39-214ENST00000614932 OR10C1Q96KK4 312 aa9□□□□□ -0.97
VPS39-214ENST00000614932 MEGF9Q9H1U4 602 aa9□□□□□ -0.97
VPS39-214ENST00000614932 CD207Q9UJ71 328 aa9□□□□□ -0.97
VPS39-214ENST00000614932 SLC45A2Q9UMX9 530 aa9□□□□□ -0.97
VPS39-214ENST00000614932 COL6A3P12111 3177 aa9□□□□□ -0.97
VPS39-214ENST00000614932 YPEL1O60688 119 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms