RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 OR5B12Q96R08 314 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 GGACTQ9BVM4 153 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 PRRT4C9JH25 899 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 TMEM250H0YL14 139 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 C1QTNF9P0C862 333 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 TMEM11P17152 192 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 OR10R2Q8NGX6 335 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 TMED6Q8WW62 240 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 OR10C1Q96KK4 312 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 TMEM68Q96MH6 324 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 SELENOIQ9C0D9 397 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 LANCL2Q9NS86 450 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 RNF115Q9Y4L5 304 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 DENND4CQ5VZ89 1909 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 PRSS38A1L453 326 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 MBTPS2O43462 519 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 STK17BO94768 372 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 CYC1P08574 325 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 OR8G3PP0DMU2 310 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 DLK1P80370 383 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 DGAT2L6Q6ZPD8 337 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 CYP2G1PQ6ZSU1 146 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 CNEP1R1Q8N9A8 125 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 SPTSSAQ969W0 71 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 APOOQ9BUR5 198 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 ABHD6Q9BV23 337 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 NOTCH4Q99466 2003 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 TRAV18A0A075B6X5 111 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 NSA2O95478 260 aaKnown RBP4.69□□□□□ -1.66
SYNE1-220ENST00000471834 PGCP20142 388 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 MOGAT2Q3SYC2 334 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 AWAT1Q58HT5 328 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 NMSQ5H8A3 153 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 C9orf152Q5JTZ5 239 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 TMEM71Q6P5X7 295 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 SULF2Q8IWU5 870 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 FRMD1Q8N878 549 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 PNRC2Q9NPJ4 139 aaKnown RBP4.69□□□□□ -1.66
SYNE1-220ENST00000471834 PTPRZ1P23471 2315 aaPredicted RBP4.69□□□□□ -1.66
SYNE1-220ENST00000471834 IGKV1-9A0A0C4DH69 117 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 C1orf196B1AJZ1 125 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 TMPRSS2O15393 492 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 DEDDO75618 318 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 TMEM225BP0DP42 221 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 GABREP78334 506 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 IL13RA2Q14627 380 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 OR9K2Q8NGE7 335 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 OR51A4Q8NGJ6 313 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 ADIPOR1Q96A54 375 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 MOGAT1Q96PD6 335 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 WWTR1Q9GZV5 400 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 CCL26Q9Y258 94 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 HS3ST3B1Q9Y662 390 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 BORCS7-ASMTA0A0B4J1R7 106 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 A0A1B0GU03 582 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 C2orf72A6NCS6 295 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 TRAF3IP2O43734 574 aaPredicted RBP4.69□□□□□ -1.66
SYNE1-220ENST00000471834 SS18L1O75177 396 aaPredicted RBP4.69□□□□□ -1.66
SYNE1-220ENST00000471834 TSPAN15O95858 294 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 HIST1H1DP16402 221 aaKnown RBP4.69□□□□□ -1.66
SYNE1-220ENST00000471834 MPLP40238 635 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 AFF3P51826 1226 aaKnown RBP4.69□□□□□ -1.66
SYNE1-220ENST00000471834 YPEL3P61236 119 aaPredicted RBP4.69□□□□□ -1.66
SYNE1-220ENST00000471834 LCN2P80188 198 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 RPL19P84098 196 aaKnown RBP4.69□□□□□ -1.66
SYNE1-220ENST00000471834 OR51A2Q8NGJ7 313 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 INTS14Q96SY0 518 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 PFDN5Q99471 154 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 SLC35B3Q9H1N7 401 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 DHCR7Q9UBM7 475 aaKnown RBP4.69□□□□□ -1.66
SYNE1-220ENST00000471834 CYB5BO43169 146 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 ADAP1O75689 374 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 IFNA17P01571 189 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 PTGER4P35408 488 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 KIR2DL1P43626 348 aaPredicted RBP4.69□□□□□ -1.66
SYNE1-220ENST00000471834 SULT1A1P50225 295 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 RPL18Q07020 188 aaKnown RBP4.69□□□□□ -1.66
SYNE1-220ENST00000471834 PRSS8Q16651 343 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 ANKRD55Q3KP44 614 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 KHDC3LQ587J8 217 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 FAAP20Q6NZ36 180 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 COLCA1Q6ZS62 124 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 FAM57BQ71RH2 274 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 C1orf210Q8IVY1 113 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 KCNG3Q8TAE7 436 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 GP6Q9HCN6 339 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 GPR84Q9NQS5 396 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 MRPS18CQ9Y3D5 142 aaKnown RBP4.69□□□□□ -1.66
SYNE1-220ENST00000471834 HEATR5BQ9P2D3 2071 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 HELZP42694 1942 aaKnown RBP4.69□□□□□ -1.66
SYNE1-220ENST00000471834 PRRC2BQ5JSZ5 2229 aaKnown RBP4.69□□□□□ -1.66
SYNE1-220ENST00000471834 hCG_1809904A0A1W2PP81 198 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 A0A1W2PPE2 198 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 A0A1W2PR64 198 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 A0A1W2PRV1 198 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 TMEM72A0PK05 275 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 PRSS37A4D1T9 235 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 H7C1C5 153 aa4.69□□□□□ -1.66
SYNE1-220ENST00000471834 NUPL2O15504 423 aaKnown RBP4.69□□□□□ -1.66
SYNE1-220ENST00000471834 TNFSF15O95150 251 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms