RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 PMP22Q01453 160 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 HLXQ14774 488 aaPredicted RBP11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 IGF2-ASQ6U949 168 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 P4HA3Q7Z4N8 544 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 PEG10Q86TG7 708 aaKnown RBP11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 FBXL14Q8N1E6 418 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 ZSCAN4Q8NAM6 433 aaPredicted RBP11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 FDCSPQ8NFU4 85 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 OR1K1Q8NGR3 316 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 POM121L2Q96KW2 1035 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 CMSS1Q9BQ75 279 aaKnown RBP11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 MFFQ9GZY8 342 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 ARL6Q9H0F7 186 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 OPA3Q9H6K4 179 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 AK3Q9UIJ7 227 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 GPR160Q9UJ42 338 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 PTPRBP23467 1997 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 LINC00862A6NCI5 91 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 FAM25EA8MYX2 175 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 GEMIN2O14893 280 aaKnown RBP11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 RRP8O43159 456 aaKnown RBP11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 DTYMKP23919 212 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 APLNRP35414 380 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 ECI1P42126 302 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 PRDX4Q13162 271 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 CLN3Q13286 438 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 SURF2Q15527 256 aaPredicted RBP11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 PIGYQ3MUY2 71 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 CLLU1Q5K131 121 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 AADACL3Q5VUY0 350 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 NSUN5P2Q63ZY6 315 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 ZNF546Q86UE3 836 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 ZNF611Q8N823 705 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 HDHD3Q9BSH5 251 aaPredicted RBP11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 ST3GAL6Q9Y274 331 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 CACNA1HO95180 2353 aa11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 OTOGLQ3ZCN5 2332 aa11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 TNRC6AQ8NDV7 1962 aaKnown RBP11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 PQLC2LA1A4F0 135 aa11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 SS18L1O75177 396 aaPredicted RBP11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 SFT2D2O95562 160 aa11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 CST4P01036 141 aa11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 IGHG3P01860 377 aa11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 SFTPBP07988 381 aa11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 RBM11P57052 281 aaKnown RBP11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 BAMBIQ13145 260 aa11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 HIKESHIQ53FT3 197 aa11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 TMEM65Q6PI78 240 aa11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 IGFL2Q6UWQ7 119 aa11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 SLC25A26Q70HW3 274 aa11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 CALHM1Q8IU99 346 aa11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 ZDHHC23Q8IYP9 409 aa11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 OR10AD1Q8NGE0 317 aa11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 BCL2L2Q92843 193 aaPredicted RBP11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 TMEM230Q96A57 120 aa11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 GMPPAQ96IJ6 420 aaPredicted RBP11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 SEC22AQ96IW7 307 aa11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 SULT4A1Q9BR01 284 aa11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 RTBDNQ9BSG5 229 aaPredicted RBP11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 GLRX2Q9NS18 164 aa11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 ANXA10Q9UJ72 324 aa11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 STARD10Q9Y365 291 aa11.16□□□□□ -0.62
SPTLC1-201ENST00000262554 A0A0B4J2A0 478 aa11.15□□□□□ -0.62
SPTLC1-201ENST00000262554 C5orf51A6NDU8 294 aa11.15□□□□□ -0.62
SPTLC1-201ENST00000262554 TUBAL3A6NHL2 446 aa11.15□□□□□ -0.62
SPTLC1-201ENST00000262554 DBX1A6NMT0 343 aa11.15□□□□□ -0.62
SPTLC1-201ENST00000262554 IL18BPO95998 194 aa11.15□□□□□ -0.62
SPTLC1-201ENST00000262554 SLC25A4P12235 298 aa11.15□□□□□ -0.62
SPTLC1-201ENST00000262554 PGAM2P15259 253 aa11.15□□□□□ -0.62
SPTLC1-201ENST00000262554 CEACAM21Q3KPI0 293 aa11.15□□□□□ -0.62
SPTLC1-201ENST00000262554 C11orf87Q6NUJ2 197 aa11.15□□□□□ -0.62
SPTLC1-201ENST00000262554 GSG1LQ6UXU4 331 aa11.15□□□□□ -0.62
SPTLC1-201ENST00000262554 PPP1R1CQ8WVI7 109 aa11.15□□□□□ -0.62
SPTLC1-201ENST00000262554 SHPKQ9UHJ6 478 aa11.15□□□□□ -0.62
SPTLC1-201ENST00000262554 C14orf166Q9Y224 244 aaKnown RBP11.15□□□□□ -0.62
SPTLC1-201ENST00000262554 TTC28Q96AY4 2481 aa11.15□□□□□ -0.63
SPTLC1-201ENST00000262554 IGKV1D-8A0A087WSZ0 117 aa11.15□□□□□ -0.63
SPTLC1-201ENST00000262554 TRAV17A0A0B4J275 112 aa11.15□□□□□ -0.63
SPTLC1-201ENST00000262554 A0A0D9SG52 128 aa11.15□□□□□ -0.63
SPTLC1-201ENST00000262554 PRR33A8MZF0 331 aa11.15□□□□□ -0.63
SPTLC1-201ENST00000262554 ZNHIT1O43257 154 aa11.15□□□□□ -0.63
SPTLC1-201ENST00000262554 PDCD6O75340 191 aa11.15□□□□□ -0.63
SPTLC1-201ENST00000262554 NGFP01138 241 aa11.15□□□□□ -0.63
SPTLC1-201ENST00000262554 FCGR3AP08637 254 aa11.15□□□□□ -0.63
SPTLC1-201ENST00000262554 PI3P19957 117 aa11.15□□□□□ -0.63
SPTLC1-201ENST00000262554 BRICD5Q6PL45 260 aa11.15□□□□□ -0.63
SPTLC1-201ENST00000262554 CLEC18BQ6UXF7 455 aa11.15□□□□□ -0.63
SPTLC1-201ENST00000262554 RFPL4BQ6ZWI9 263 aa11.15□□□□□ -0.63
SPTLC1-201ENST00000262554 SAXO1Q8IYX7 474 aa11.15□□□□□ -0.63
SPTLC1-201ENST00000262554 OR5L1Q8NGL2 311 aa11.15□□□□□ -0.63
SPTLC1-201ENST00000262554 COQ8AQ8NI60 647 aa11.15□□□□□ -0.63
SPTLC1-201ENST00000262554 WBP1Q96G27 269 aa11.15□□□□□ -0.63
SPTLC1-201ENST00000262554 HIST1H2AAQ96QV6 131 aa11.15□□□□□ -0.63
SPTLC1-201ENST00000262554 USB1Q9BQ65 265 aaKnown RBP11.15□□□□□ -0.63
SPTLC1-201ENST00000262554 ZNF2Q9BSG1 426 aaPredicted RBP11.15□□□□□ -0.63
SPTLC1-201ENST00000262554 GSX2Q9BZM3 304 aa11.15□□□□□ -0.63
SPTLC1-201ENST00000262554 NECAP2Q9NVZ3 263 aa11.15□□□□□ -0.63
SPTLC1-201ENST00000262554 ZNF581Q9P0T4 197 aa11.15□□□□□ -0.63
SPTLC1-201ENST00000262554 MED12LQ86YW9 2145 aa11.14□□□□□ -0.63
SPTLC1-201ENST00000262554 C13orf42A0A1B0GVH6 325 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms