RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 CFIP05156 583 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 SOD3P08294 240 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 GSTP1P09211 210 aaKnown RBP4.65□□□□□ -1.67
USP28-213ENST00000544967 GZMBP10144 247 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 CD82P27701 267 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 PEBP1P30086 187 aaKnown RBP4.65□□□□□ -1.67
USP28-213ENST00000544967 RPS4XP62701 263 aaKnown RBP4.65□□□□□ -1.67
USP28-213ENST00000544967 ZNF117Q03924 483 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 OR7A5Q15622 319 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 IQCJQ1A5X6 159 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 ACSF3Q4G176 576 aaPredicted RBP4.65□□□□□ -1.67
USP28-213ENST00000544967 LINC01590Q5TEZ4 76 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 SLC48A1Q6P1K1 146 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 TMEM220Q6QAJ8 160 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 RNF44Q7L0R7 432 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 SLC16A14Q7RTX9 510 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 P4HA3Q7Z4N8 544 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 C17orf64Q86WR6 236 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 C1orf87Q8N0U7 546 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 MMP21Q8N119 569 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 DEFB119Q8N690 84 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 CCDC54Q8NEL0 328 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 NUP43Q8NFH3 380 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 CCL4L1Q8NHW4 92 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 ZCCHC14Q8WYQ9 949 aaKnown RBP4.65□□□□□ -1.67
USP28-213ENST00000544967 ZDHHC16Q969W1 377 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 MRGPRFQ96AM1 343 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 FBXO17Q96EF6 278 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 CPNE2Q96FN4 548 aaPredicted RBP4.65□□□□□ -1.67
USP28-213ENST00000544967 DCBLD2Q96PD2 775 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 VCX2Q9H322 139 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 FSCN3Q9NQT6 498 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 PRDM7Q9NQW5 492 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 GPR132Q9UNW8 380 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 ARHGEF17Q96PE2 2063 aaPredicted RBP4.64□□□□□ -1.67
USP28-213ENST00000544967 A0A0C4DFX4 3053 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 TDRD6O60522 2096 aaKnown RBP4.64□□□□□ -1.67
USP28-213ENST00000544967 MDC1Q14676 2089 aaKnown RBP4.64□□□□□ -1.67
USP28-213ENST00000544967 A0A1W2PQM1 296 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 SPRY1O43609 319 aaPredicted RBP4.64□□□□□ -1.67
USP28-213ENST00000544967 OR8U9P0C7N5 309 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 CD1BP29016 333 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 CD200P41217 278 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 P2RY1P47900 373 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 PRPS1P60891 318 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 RANP62826 216 aaKnown RBP4.64□□□□□ -1.67
USP28-213ENST00000544967 PMPCAQ10713 525 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 ZNHIT3Q15649 155 aaPredicted RBP4.64□□□□□ -1.67
USP28-213ENST00000544967 TRIP6Q15654 476 aaKnown RBP4.64□□□□□ -1.67
USP28-213ENST00000544967 ZNF260Q3ZCT1 412 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 SOHLH1Q5JUK2 328 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 C1orf194Q5T5A4 169 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 GGNBP1Q5YKI7 109 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 FCRL6Q6DN72 434 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 MFSD12Q6NUT3 480 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 LANCL3Q6ZV70 420 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 LYPD6Q86Y78 171 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 BOLLQ8N9W6 283 aaKnown RBP4.64□□□□□ -1.67
USP28-213ENST00000544967 NPEPL1Q8NDH3 523 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 TMEM104Q8NE00 496 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 PLPP5Q8NEB5 264 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 OR52N4Q8NGI2 321 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 OR14K1Q8NGZ2 314 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 OR8U1Q8NH10 309 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 TAAR8Q969N4 342 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 BTF3L4Q96K17 158 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 PYGO2Q9BRQ0 406 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 HIF1ANQ9NWT6 349 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 KIAA1456Q9P272 454 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 PILRAQ9UKJ1 303 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 RAB22AQ9UL26 194 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 PTRH2Q9Y3E5 179 aaKnown RBP4.64□□□□□ -1.67
USP28-213ENST00000544967 MMACHCQ9Y4U1 282 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 A0A1W2PNU3 283 aaPredicted RBP4.64□□□□□ -1.67
USP28-213ENST00000544967 A0A1W2PPQ1 181 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 FAM171A2A8MVW0 826 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 CTSVO60911 334 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 LDB3O75112 727 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 CA11O75493 328 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 VAMP5O95183 116 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 FTH1P19P0C7X4 201 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 CDKN1AP38936 164 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 AQP2P41181 271 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 MC3RP41968 323 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 SOX8P57073 446 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 UBE2G2P60604 165 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 RPS20P60866 119 aaKnown RBP4.64□□□□□ -1.67
USP28-213ENST00000544967 SNRPNP63162 240 aaKnown RBP4.64□□□□□ -1.67
USP28-213ENST00000544967 KIR2DS3Q14952 304 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 WBP2NLQ6ICG8 309 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 CATSPERDQ86XM0 798 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 ZNF664Q8N3J9 261 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 D2HGDHQ8N465 521 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 OR51F2Q8NH61 342 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 LMX1AQ8TE12 382 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 ISOC2Q96AB3 205 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 TVP23CQ96ET8 276 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 SEC22AQ96IW7 307 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 MRGPRX4Q96LA9 322 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 C4orf45Q96LM5 186 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms