RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 CCDC163A0A0D9SF12 145 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 IL15RAQ13261 267 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 C1orf61Q13536 156 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 FNDC7Q5VTL7 733 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 ZNF385CQ66K41 422 aaPredicted RBP11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 SUMF1Q8NBK3 374 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 TMEM150CB9EJG8 249 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 H0YIG0 161 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 PTBP3O95758 552 aaKnown RBP11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 SLC25A24Q6NUK1 477 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 DEGS2Q6QHC5 323 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 OR5L1Q8NGL2 311 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 SLC37A2Q8TED4 501 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 HAS2Q92819 552 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 BADQ92934 168 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 FAM206AQ9NX38 181 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 NXT1Q9UKK6 140 aaKnown RBP11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 CA14Q9ULX7 337 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 ELOA3CA0A087WX78 387 aaPredicted RBP11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 IGKV1D-43A0A0B4J1Z2 117 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 FAM230AA0A1W2PPH8 454 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 ST8SIA3O43173 380 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 SRSF10O75494 262 aaKnown RBP11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 TRGC1P0CF51 173 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 RPS2P15880 293 aaKnown RBP11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 DAP3P51398 398 aaKnown RBP11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 ELOBQ15370 118 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 CARD17Q5XLA6 110 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 FAM57BQ71RH2 274 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 LHFPL1Q86WI0 220 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 CYB561D1Q8N8Q1 229 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 RNF133Q8WVZ7 376 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 TVP23CQ96ET8 276 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 WSB1Q9Y6I7 421 aa11.32□□□□□ -0.6
SFSWAP-209ENST00000540469 H3BML4 177 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 PLRG1O43660 514 aaKnown RBP11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 SCAF4O95104 1147 aaKnown RBP11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 OR5AC1P0C628 307 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 EDN3P14138 238 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 BIDP55957 195 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 ERVFRD-1P60508 538 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 CCL20P78556 96 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 LYZL2Q7Z4W2 148 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 LYPD6Q86Y78 171 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 HIST3H2BBQ8N257 126 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 FAM210BQ96KR6 192 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 SLC7A11Q9UPY5 501 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 C2orf72A6NCS6 295 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 HSPA12AO43301 675 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 DXOO77932 396 aaKnown RBP11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 HPNP05981 417 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 MDKP21741 143 aaPredicted RBP11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 C1orf87Q8N0U7 546 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 PLPP5Q8NEB5 264 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 OR10AD1Q8NGE0 317 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 STT3BQ8TCJ2 826 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 GINS3Q9BRX5 216 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 RFNGQ9Y644 331 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 HS3ST3B1Q9Y662 390 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 SLCO1B1Q9Y6L6 691 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 TLCD2A6NGC4 264 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 CEACAM18A8MTB9 384 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 ATXN7O15265 892 aaPredicted RBP11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 OR5H8P0DN80 308 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 CTSEP14091 401 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 FOSL2P15408 326 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 TUBG1P23258 451 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 OPRM1P35372 400 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 RND3P61587 244 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 LSM6P62312 80 aaKnown RBP11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 RPL23AP62750 156 aaKnown RBP11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 RNF4P78317 190 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 HHEXQ03014 270 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 TANGO2Q6ICL3 276 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 SLC22A25Q6T423 547 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 C6orf201Q7Z4U5 140 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 RTN4IP1Q8WWV3 396 aaPredicted RBP11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 HDHD3Q9BSH5 251 aaPredicted RBP11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 VDAC3Q9Y277 283 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 TMED3Q9Y3Q3 217 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 CHD9Q3L8U1 2897 aa11.31□□□□□ -0.6
SFSWAP-209ENST00000540469 B4DGG1 531 aa11.3□□□□□ -0.6
SFSWAP-209ENST00000540469 ZNF728P0DKX0 622 aa11.3□□□□□ -0.6
SFSWAP-209ENST00000540469 MYOGP15173 224 aa11.3□□□□□ -0.6
SFSWAP-209ENST00000540469 RABIFP47224 123 aa11.3□□□□□ -0.6
SFSWAP-209ENST00000540469 HSD17B7P56937 341 aa11.3□□□□□ -0.6
SFSWAP-209ENST00000540469 SLC37A1P57057 533 aa11.3□□□□□ -0.6
SFSWAP-209ENST00000540469 VAMP2P63027 116 aa11.3□□□□□ -0.6
SFSWAP-209ENST00000540469 LRP11Q86VZ4 500 aa11.3□□□□□ -0.6
SFSWAP-209ENST00000540469 C17orf78Q8N4C9 275 aa11.3□□□□□ -0.6
SFSWAP-209ENST00000540469 OR14L1PQ8NHC6 308 aa11.3□□□□□ -0.6
SFSWAP-209ENST00000540469 SLC46A1Q96NT5 459 aa11.3□□□□□ -0.6
SFSWAP-209ENST00000540469 NUDT16L1Q9BRJ7 211 aaKnown RBP11.3□□□□□ -0.6
SFSWAP-209ENST00000540469 ABHD14AQ9BUJ0 271 aa11.3□□□□□ -0.6
SFSWAP-209ENST00000540469 VN1R1Q9GZP7 353 aa11.3□□□□□ -0.6
SFSWAP-209ENST00000540469 GEMIN2O14893 280 aaKnown RBP11.3□□□□□ -0.6
SFSWAP-209ENST00000540469 APOBEC1P41238 236 aaKnown RBP11.3□□□□□ -0.6
SFSWAP-209ENST00000540469 NUBP1P53384 320 aa11.3□□□□□ -0.6
SFSWAP-209ENST00000540469 ZNF121P58317 390 aaPredicted RBP11.3□□□□□ -0.6
SFSWAP-209ENST00000540469 PPA1Q15181 289 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 110.8 ms