RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 SCP2D1Q9UJQ7 156 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 SELENOKQ9Y6D0 94 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 URGCP-MRPS24S4R325 110 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 NOTCH3Q9UM47 2321 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 DLGAP1O14490 977 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 SLC2A10O95528 541 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 SCGB1D1O95968 90 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 GYPBP06028 91 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 NGFRP08138 427 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 MNDAP41218 407 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 GIPRP48546 466 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 LRRC37A5PQ49AS3 106 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 ANKRD16Q6P6B7 361 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 OAFQ86UD1 273 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 LHFPL3Q86UP9 236 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 ARMC10Q8N2F6 343 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 OR9K2Q8NGE7 335 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 OR11L1Q8NGX0 322 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 OR2T4Q8NH00 348 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 CD300LFQ8TDQ1 290 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 RNASE6Q93091 150 aaKnown RBP6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 SLCO4A1Q96BD0 722 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 CLCC1Q96S66 551 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 PIMREGQ9BSJ6 248 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 FUZQ9BT04 418 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 TMEM43Q9BTV4 400 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 ULBP2Q9BZM5 246 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 RHOFQ9HBH0 211 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 LPAR2Q9HBW0 351 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 KRCC1Q9NPI7 259 aaPredicted RBP6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 SMCO4Q9NRQ5 59 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 CLCF1Q9UBD9 225 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 CORO2BQ9UQ03 480 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 CMAHPQ9Y471 501 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 NPIPB9F8W1W9 429 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 BHLHE40O14503 412 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 SLC43A1O75387 559 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 GCM2O75603 506 aaPredicted RBP6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 RCBTB2O95199 551 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 LINC00614P0C842 121 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 FCGR2AP12318 317 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 GGT1P19440 569 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 RBX1P62877 108 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 ABLIM2Q6H8Q1 611 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 ZNF620Q6ZNG0 422 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 CDC20BQ86Y33 519 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 ZNF295-AS1Q8N0V1 137 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 ZFP3Q96NJ6 502 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 TNFRSF13CQ96RJ3 184 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 NKX3-1Q99801 234 aaPredicted RBP6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 SLC35D1Q9NTN3 355 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 ZNF629Q9UEG4 869 aaPredicted RBP6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 SAMD4AQ9UPU9 718 aaKnown RBP6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 A0A1W2PPR1 153 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 ACOT8O14734 319 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 CDC14BO60729 498 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 LIPFP07098 398 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 CELA3BP08861 270 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 S100GP29377 79 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 GUCA1AP43080 201 aaPredicted RBP6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 FABP6P51161 128 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 CAV3P56539 151 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 CLRN1P58418 232 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 CTXN1P60606 82 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 SLC35A1P78382 337 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 BSPH1Q075Z2 132 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 RGS7BPQ6MZT1 257 aaPredicted RBP6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 TMPRSS11FQ6ZWK6 438 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 ZPLD1Q8TCW7 415 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 ST8SIA1Q92185 356 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 ZNF2Q9BSG1 426 aaPredicted RBP6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 MIXL1Q9H2W2 232 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 FN3KQ9H479 309 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 RNF122Q9H9V4 155 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 MRPL15Q9P015 296 aaKnown RBP6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 ARHGAP32A7KAX9 2087 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 C5orf52A6NGY3 159 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 SLC22A31A6NKX4 558 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 SURF4O15260 269 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 FMO6PO60774 539 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 HIST1H1BP16401 226 aaKnown RBP6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 ARF1P84077 181 aaKnown RBP6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 ST3GAL4Q11206 333 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 TMEM177Q53S58 311 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 LDLRAD2Q5SZI1 272 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 SKA3Q8IX90 412 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 CMTM1Q8IZ96 169 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 OR9Q2Q8NGE9 314 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 OR13C3Q8NGS6 347 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 SCARB1Q8WTV0 552 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 UBE2FQ969M7 185 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 RNFT2Q96EX2 444 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 GMPPAQ96IJ6 420 aaPredicted RBP6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 C7orf34Q96L11 122 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 TP53RKQ96S44 253 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 NXF2Q9GZY0 626 aaKnown RBP6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 DNAJC27Q9NZQ0 273 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 ING1Q9UK53 422 aaPredicted RBP6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 PPP1R3CQ9UQK1 317 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 MED31Q9Y3C7 131 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 149.8 ms