RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 AADACL4Q5VUY2 407 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 SLX4IPQ5VYV7 408 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 NXNL2Q5VZ03 156 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 TMEM42Q69YG0 159 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 C12orf73Q69YU5 71 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 ASPHD2Q6ICH7 369 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 HCP5Q6MZN7 132 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 SLC35F2Q8IXU6 374 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 FAM185AQ8N0U4 392 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 TCEANCQ8N8B7 351 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 OR5D13Q8NGL4 314 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 TMEM163Q8TC26 289 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 CADM1Q9BY67 442 aaKnown RBP13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 ADGRL4Q9HBW9 690 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 GTF2A1LQ9UNN4 478 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 SF3B6Q9Y3B4 125 aaKnown RBP13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 R4GMQ9 66 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 V9GYS6 101 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 CMYA5Q8N3K9 4069 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 VWFP04275 2813 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 RFPL4AA6NLU0 287 aa13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 ZAR1LA6NP61 321 aa13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 RFPL4AL1F8VTS6 287 aa13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 H0YAE9 185 aa13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 DLGAP1O14490 977 aa13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 DYNC1I1O14576 645 aa13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 MITFO75030 526 aaPredicted RBP13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 NOS1APO75052 506 aaPredicted RBP13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 PGA5P0DJD9 388 aa13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 HAAOP46952 286 aa13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 CAPZA1P52907 286 aa13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 EGR3Q06889 387 aa13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 ATP6AP1Q15904 470 aa13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 BCL2L15Q5TBC7 163 aa13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 Q6ZSR3 168 aa13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 ZNF573Q86YE8 665 aa13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 ELMOD2Q8IZ81 293 aa13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 CD177Q8N6Q3 437 aa13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 BEND2Q8NDZ0 799 aa13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 ZNF488Q96MN9 340 aa13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 MMP27Q9H306 513 aa13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 GPR173Q9NS66 373 aa13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 C19orf12Q9NSK7 152 aa13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 CLN6Q9NWW5 311 aa13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 OR52A1Q9UKL2 312 aa13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 POLDIP2Q9Y2S7 368 aa13.53□□□□□ -0.24
CCDC28B-204ENST00000469003 A0A1B0GTI1 187 aa13.52□□□□□ -0.25
CCDC28B-204ENST00000469003 PQLC2LA1A4F0 135 aa13.52□□□□□ -0.25
CCDC28B-204ENST00000469003 DHRS7CA6NNS2 312 aa13.52□□□□□ -0.25
CCDC28B-204ENST00000469003 ZNF670-ZNF695F2Z2N8 137 aa13.52□□□□□ -0.25
CCDC28B-204ENST00000469003 G3V2T6 193 aa13.52□□□□□ -0.25
CCDC28B-204ENST00000469003 MAGEB4O15481 346 aaPredicted RBP13.52□□□□□ -0.25
CCDC28B-204ENST00000469003 SYNGR1O43759 233 aa13.52□□□□□ -0.25
CCDC28B-204ENST00000469003 EPHA2P29317 976 aa13.52□□□□□ -0.25
CCDC28B-204ENST00000469003 PRDX2P32119 198 aa13.52□□□□□ -0.25
CCDC28B-204ENST00000469003 KDM4DQ6B0I6 523 aa13.52□□□□□ -0.25
CCDC28B-204ENST00000469003 GID4Q8IVV7 300 aa13.52□□□□□ -0.25
CCDC28B-204ENST00000469003 ZNF561Q8N587 486 aa13.52□□□□□ -0.25
CCDC28B-204ENST00000469003 OR14K1Q8NGZ2 314 aa13.52□□□□□ -0.25
CCDC28B-204ENST00000469003 RBM4BQ9BQ04 359 aaKnown RBP13.52□□□□□ -0.25
CCDC28B-204ENST00000469003 TCF7L1Q9HCS4 588 aa13.52□□□□□ -0.25
CCDC28B-204ENST00000469003 MRM2Q9UI43 246 aaKnown RBP13.52□□□□□ -0.25
CCDC28B-204ENST00000469003 SNX5Q9Y5X3 404 aa13.52□□□□□ -0.25
CCDC28B-204ENST00000469003 A0A1W2PPH5 198 aa13.51□□□□□ -0.25
CCDC28B-204ENST00000469003 SLC1A7O00341 560 aa13.51□□□□□ -0.25
CCDC28B-204ENST00000469003 ANGPTL7O43827 346 aa13.51□□□□□ -0.25
CCDC28B-204ENST00000469003 NXPH2O95156 264 aa13.51□□□□□ -0.25
CCDC28B-204ENST00000469003 RPL31P62899 125 aaKnown RBP13.51□□□□□ -0.25
CCDC28B-204ENST00000469003 PLEKHG7Q6ZR37 379 aa13.51□□□□□ -0.25
CCDC28B-204ENST00000469003 MKXQ8IYA7 352 aa13.51□□□□□ -0.25
CCDC28B-204ENST00000469003 IL4I1Q96RQ9 567 aa13.51□□□□□ -0.25
CCDC28B-204ENST00000469003 NRIP2Q9BQI9 281 aa13.51□□□□□ -0.25
CCDC28B-204ENST00000469003 GABARAPL1Q9H0R8 117 aa13.51□□□□□ -0.25
CCDC28B-204ENST00000469003 HES4Q9HCC6 221 aa13.51□□□□□ -0.25
CCDC28B-204ENST00000469003 FAM53CQ9NYF3 392 aa13.51□□□□□ -0.25
CCDC28B-204ENST00000469003 ENOPH1Q9UHY7 261 aa13.51□□□□□ -0.25
CCDC28B-204ENST00000469003 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.51□□□□□ -0.25
CCDC28B-204ENST00000469003 ANKRD61A6NGH8 418 aa13.5□□□□□ -0.25
CCDC28B-204ENST00000469003 H3BUX3 64 aa13.5□□□□□ -0.25
CCDC28B-204ENST00000469003 CCL1P22362 96 aa13.5□□□□□ -0.25
CCDC28B-204ENST00000469003 MPZP25189 248 aa13.5□□□□□ -0.25
CCDC28B-204ENST00000469003 FASP25445 335 aa13.5□□□□□ -0.25
CCDC28B-204ENST00000469003 BNIP1Q12981 228 aa13.5□□□□□ -0.25
CCDC28B-204ENST00000469003 ASRGL1Q7L266 308 aa13.5□□□□□ -0.25
CCDC28B-204ENST00000469003 ZDHHC13Q8IUH4 622 aa13.5□□□□□ -0.25
CCDC28B-204ENST00000469003 OR51G2Q8NGK0 314 aa13.5□□□□□ -0.25
CCDC28B-204ENST00000469003 C17orf50Q8WW18 174 aa13.5□□□□□ -0.25
CCDC28B-204ENST00000469003 UBE2FQ969M7 185 aa13.5□□□□□ -0.25
CCDC28B-204ENST00000469003 AJUBAQ96IF1 538 aa13.5□□□□□ -0.25
CCDC28B-204ENST00000469003 SSX3Q99909 188 aa13.5□□□□□ -0.25
CCDC28B-204ENST00000469003 FAM234AQ9H0X4 552 aa13.5□□□□□ -0.25
CCDC28B-204ENST00000469003 MEGF9Q9H1U4 602 aa13.5□□□□□ -0.25
CCDC28B-204ENST00000469003 PPA2Q9H2U2 334 aa13.5□□□□□ -0.25
CCDC28B-204ENST00000469003 HEXA-AS1Q9H8Q6 139 aa13.5□□□□□ -0.25
CCDC28B-204ENST00000469003 WARS2Q9UGM6 360 aaKnown RBP13.5□□□□□ -0.25
CCDC28B-204ENST00000469003 WNK1Q9H4A3 2382 aa13.49□□□□□ -0.25
CCDC28B-204ENST00000469003 A6NIN4 97 aa13.49□□□□□ -0.25
CCDC28B-204ENST00000469003 RPP14O95059 124 aaKnown RBP13.49□□□□□ -0.25
CCDC28B-204ENST00000469003 KRT8P05787 483 aa13.49□□□□□ -0.25
CCDC28B-204ENST00000469003 CEBPDP49716 269 aaPredicted RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms