RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 PSG2P11465 335 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 GLRA1P23415 457 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 FASP25445 335 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 SRSF4Q08170 494 aaKnown RBP8.89□□□□□ -0.99
VPS39-208ENST00000564994 ZNF829Q3KNS6 432 aaPredicted RBP8.89□□□□□ -0.99
VPS39-208ENST00000564994 LRRC10Q5BKY1 277 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 PRR31Q5SQ13 230 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 C1orf146Q5VVC0 180 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 PLCXD3Q63HM9 321 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 METAP1DQ6UB28 335 aaPredicted RBP8.89□□□□□ -0.99
VPS39-208ENST00000564994 MOB3CQ70IA8 216 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 SSX6Q7RTT6 188 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 THAP5Q7Z6K1 395 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 LDLRAD3Q86YD5 345 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 ZDHHC13Q8IUH4 622 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 TMEM86BQ8N661 226 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 OR5A2Q8NGI9 324 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 AQP3Q92482 292 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 H1FXQ92522 213 aaKnown RBP8.89□□□□□ -0.99
VPS39-208ENST00000564994 TNFRSF14Q92956 283 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 DMRTB1Q96MA1 342 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 ZNF488Q96MN9 340 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 CIB1Q99828 191 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 PRRG3Q9BZD7 231 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 ELL3Q9HB65 397 aaPredicted RBP8.89□□□□□ -0.99
VPS39-208ENST00000564994 CLN6Q9NWW5 311 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 C1RLQ9NZP8 487 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 SLC25A10Q9UBX3 287 aaPredicted RBP8.89□□□□□ -0.99
VPS39-208ENST00000564994 MRM2Q9UI43 246 aaKnown RBP8.89□□□□□ -0.99
VPS39-208ENST00000564994 ZNF222Q9UK12 451 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 MAB21L2Q9Y586 359 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 MMP24Q9Y5R2 645 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 A6NIN4 97 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 NKX6-3A6NJ46 265 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 OR5B21A6NL26 309 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 ZNF670-ZNF695F2Z2N8 137 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 LOC110117498-PIK3R3F6TDL0 507 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 SYNGR1O43759 233 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 IER3P46695 156 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 GABRA2P47869 451 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 RAG2P55895 527 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 CAV3P56539 151 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 KLRD1Q13241 179 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 ZBTB37Q5TC79 503 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 TMEM42Q69YG0 159 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 HAGHLQ6PII5 290 aaPredicted RBP8.88□□□□□ -0.99
VPS39-208ENST00000564994 Q6ZSR3 168 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 ELMOD2Q8IZ81 293 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 PNKDQ8N490 385 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 KIR3DL3Q8N743 410 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 ZNRF1Q8ND25 227 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 OR51G2Q8NGK0 314 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 OR14K1Q8NGZ2 314 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 SSMEM1Q8WWF3 244 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 ITFG2Q969R8 447 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 MED30Q96HR3 178 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 MNTQ99583 582 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 TBX5Q99593 518 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 SLITRK2Q9H156 845 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 ZNF696Q9H7X3 374 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 H2AFY2Q9P0M6 372 aaPredicted RBP8.88□□□□□ -0.99
VPS39-208ENST00000564994 ENPP5Q9UJA9 477 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 OR52A1Q9UKL2 312 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 GTF2A1LQ9UNN4 478 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 SLC22A13Q9Y226 551 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 POMT1Q9Y6A1 747 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 R4GMQ9 66 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 V9GYS6 101 aa8.88□□□□□ -0.99
VPS39-208ENST00000564994 A0A1W2PRD5 423 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 A0A1W2PRF3 423 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 A0A1W2PRM7 423 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 GPR137BO60478 399 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 MTRF1O75570 445 aaKnown RBP8.87□□□□□ -0.99
VPS39-208ENST00000564994 ATP5HO75947 161 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 NDUFA7O95182 113 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 APOL3O95236 402 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 NRASP01111 189 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 NDUFB7P17568 137 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 RASSF2P50749 326 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 EGR3Q06889 387 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 ZNF684Q5T5D7 378 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 BCL2L15Q5TBC7 163 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 ACP7Q6ZNF0 438 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 GID4Q8IVV7 300 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 CMTM4Q8IZR5 234 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 CD177Q8N6Q3 437 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 POC1AQ8NBT0 407 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 ZNF671Q8TAW3 534 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 TBC1D15Q8TC07 691 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 SDSLQ96GA7 329 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 GABARAPL3Q9BY60 117 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 MOB1AQ9H8S9 216 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 GPR173Q9NS66 373 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 OAZ3Q9UMX2 235 aa8.87□□□□□ -0.99
VPS39-208ENST00000564994 NOTCH1P46531 2555 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 A0A1W2PQL4 384 aaPredicted RBP8.86□□□□□ -0.99
VPS39-208ENST00000564994 PQLC2LA1A4F0 135 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 RFPL4AA6NLU0 287 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 RFPL4AL1F8VTS6 287 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 J3QT63 122 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms