RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 ZPLD1Q8TCW7 415 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 RLN3Q8WXF3 142 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 TMEM37Q8WXS4 190 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 FAM3CQ92520 227 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 SLC25A28Q96A46 364 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 ZDHHC12Q96GR4 267 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 REEP6Q96HR9 211 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 AICDAQ9GZX7 198 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 HEXA-AS1Q9H8Q6 139 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 C1orf123Q9NWV4 160 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 RAB22AQ9UL26 194 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 C19orf53Q9UNZ5 99 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-203ENST00000547825 TRPM6Q9BX84 2022 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 LAMA5O15230 3695 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 BTBD17A6NE02 478 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF587BE7ETH6 402 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 PTP4A3O75365 173 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 ST6GAL1P15907 406 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 ELLP55199 621 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-203ENST00000547825 BIDP55957 195 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 SLC37A1P57057 533 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 HNRNPKP61978 463 aaKnown RBP eCLIP4.87□□□□□ -1.63
LIMA1-203ENST00000547825 RPS15P62841 145 aaKnown RBP4.87□□□□□ -1.63
LIMA1-203ENST00000547825 TMEM215Q68D42 235 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 LPCAT3Q6P1A2 487 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 SLC22A24Q8N4F4 322 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 TMEM156Q8N614 296 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 ARIH2OSQ8N7S6 290 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF383Q8NA42 475 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 MALSU1Q96EH3 234 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 SNX22Q96L94 193 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF2Q9BSG1 426 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-203ENST00000547825 LMF2Q9BU23 707 aaKnown RBP4.87□□□□□ -1.63
LIMA1-203ENST00000547825 DUSP22Q9NRW4 184 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 MRPS18AQ9NVS2 196 aaKnown RBP4.87□□□□□ -1.63
LIMA1-203ENST00000547825 KMT2BQ9UMN6 2715 aaPredicted RBP4.86□□□□□ -1.63
LIMA1-203ENST00000547825 A0A087WV48 116 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 IGHV3-20A0A0C4DH32 117 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 G3V3Y1 287 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 ADAM10O14672 748 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 MSTNO14793 375 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 WNT11O96014 354 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 NAGAP17050 411 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 NHLH1Q02575 133 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 RUNX3Q13761 415 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 PRTGQ2VWP7 1150 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 C1QL3Q5VWW1 255 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 RAET1LQ5VY80 246 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 C5orf46Q6UWT4 87 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 WDR88Q6ZMY6 472 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 OR1J1Q8NGS3 322 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 ADAMTS18Q8TE60 1221 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 RPUSD4Q96CM3 377 aaKnown RBP4.86□□□□□ -1.63
LIMA1-203ENST00000547825 RBMXL1Q96E39 390 aaKnown RBP4.86□□□□□ -1.63
LIMA1-203ENST00000547825 MOGAT1Q96PD6 335 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 ABHD6Q9BV23 337 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 SHARPINQ9H0F6 387 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 SLCO5A1Q9H2Y9 848 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 RASL12Q9NYN1 266 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 SLC45A2Q9UMX9 530 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 WNK2Q9Y3S1 2297 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 PCNX3Q9H6A9 2034 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 CFAP47Q6ZTR5 3102 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 CACNA1HO95180 2353 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 A0A087X0M5 115 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 A0A0A6YYD5 115 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 TMEM272A0A1B0GTI8 110 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 A0A1B0GX30 115 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 C9orf170A2RU37 121 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 SLC17A2O00624 439 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 JTBO76095 146 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 MT-ND4LP03901 98 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 RPL29P47914 159 aaKnown RBP4.86□□□□□ -1.63
LIMA1-203ENST00000547825 AGBL4Q5VU57 503 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 ANKRD16Q6P6B7 361 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 CBLN3Q6UW01 205 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 Q6ZSR6 202 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 SFTPA1Q8IWL2 248 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 OR56B2PQ8NGI1 322 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 TERB2Q8NHR7 220 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 KCNG3Q8TAE7 436 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 DAZLQ92904 295 aaKnown RBP4.86□□□□□ -1.63
LIMA1-203ENST00000547825 KTI12Q96EK9 354 aaPredicted RBP4.86□□□□□ -1.63
LIMA1-203ENST00000547825 BORCS8Q96FH0 119 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 ARHGDIGQ99819 225 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 GABRG3Q99928 467 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 CABLES2Q9BTV7 478 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 PDE7BQ9NP56 450 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 AK3Q9UIJ7 227 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 B3GALT5Q9Y2C3 310 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 SLC22A7Q9Y694 548 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 HEATR5AQ86XA9 2040 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 A0A1W2PPQ1 181 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 OR6C6A6NF89 314 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 CDRT15L2A8MXV6 281 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 C4orf51C9J302 202 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 NPIPA2E9PIF3 369 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 NPIPA3F8WFD2 350 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 DNAJB6O75190 326 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 UTS2O95399 124 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms