RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 TMEM165Q9HC07 324 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 PLCXD1Q9NUJ7 323 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 UBAP1Q9NZ09 502 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 PAIP2BQ9ULR5 123 aaKnown RBP9.94□□□□□ -0.82
VPS52-213ENST00000461743 IGHV3-64DA0A0J9YX35 117 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 ANKRD61A6NGH8 418 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 HNRNPCP07910 306 aaKnown RBP eCLIP9.93□□□□□ -0.82
VPS52-213ENST00000461743 GNAO1P09471 354 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 LIMS3P0CW19 117 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 LIMS4P0CW20 117 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 HOXB4P17483 251 aaPredicted RBP9.93□□□□□ -0.82
VPS52-213ENST00000461743 THBS2P35442 1172 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 PSMB10P40306 273 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 GPM6AP51674 278 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 GBX2P52951 348 aaPredicted RBP9.93□□□□□ -0.82
VPS52-213ENST00000461743 CSNK2BP67870 215 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 ALKBH1Q13686 389 aaKnown RBP9.93□□□□□ -0.82
VPS52-213ENST00000461743 KCTD8Q6ZWB6 473 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 LHFPL3Q86UP9 236 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 ZNF573Q86YE8 665 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 C11orf53Q8IXP5 236 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 OR52N1Q8NH53 320 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 LRRC29Q8WV35 223 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 POM121Q96HA1 1249 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 TMEM80Q96HE8 168 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 RNF170Q96K19 258 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 TMEM246Q9BRR3 403 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 COMMD4Q9H0A8 199 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 DNTTIP1Q9H147 329 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 PLGRKTQ9HBL7 147 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 HIF1ANQ9NWT6 349 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 FRRS1LQ9P0K9 344 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 HHLA2Q9UM44 414 aa9.93□□□□□ -0.82
VPS52-213ENST00000461743 CUBNO60494 3623 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 CCDC160A6NGH7 325 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 OR4C45A6NMZ5 311 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 ZNF732B4DXR9 585 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 CDIPTO14735 213 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 PLPP2O43688 288 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 SERPINA3P01011 423 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 FAM157CP0CG43 387 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 NANOS3P60323 173 aaKnown RBP9.92□□□□□ -0.82
VPS52-213ENST00000461743 SCGB2A2Q13296 93 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 CNN3Q15417 329 aaKnown RBP9.92□□□□□ -0.82
VPS52-213ENST00000461743 MICBQ29980 383 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 ODF4Q2M2E3 257 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 CR1LQ2VPA4 569 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 KRTAP21-3Q3LHN1 58 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 CEP78Q5JTW2 689 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 FAM120AOSQ5T036 256 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 Q6ZNX1 250 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 MOB3CQ70IA8 216 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 UTS2BQ765I0 119 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 SCCPDHQ8NBX0 429 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 RPS4Y2Q8TD47 263 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 PPP1R14AQ96A00 147 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 SSBP3Q9BWW4 388 aaPredicted RBP9.92□□□□□ -0.82
VPS52-213ENST00000461743 ANKRD60Q9BZ19 345 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 FGF23Q9GZV9 251 aaPredicted RBP9.92□□□□□ -0.82
VPS52-213ENST00000461743 OR51I2Q9H344 312 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 ERVK-18Q9QC07 812 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 KAAG1Q9UBP8 84 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 OR5V1Q9UGF6 321 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 SLC7A11Q9UPY5 501 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 POLDIP2Q9Y2S7 368 aa9.92□□□□□ -0.82
VPS52-213ENST00000461743 PQLC2LA1A4F0 135 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 KIAA1324LA8MWY0 1029 aaPredicted RBP9.91□□□□□ -0.82
VPS52-213ENST00000461743 J3QT63 122 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 WNT2P09544 360 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 ZNF20P17024 532 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 MYF6P23409 242 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 MPZP25189 248 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 CD80P33681 288 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 ALDH3B2P48448 385 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 PITPNBP48739 271 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 TAS2R43P59537 309 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 GNB2P62879 340 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 ST3GAL4Q11206 333 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 DCAF12L2Q5VW00 463 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 RPL22L1Q6P5R6 122 aaKnown RBP9.91□□□□□ -0.82
VPS52-213ENST00000461743 ZNF826PQ6ZT77 177 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 ZNF676Q8N7Q3 588 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 DNAAF1Q8NEP3 725 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 ZNF671Q8TAW3 534 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 BEX2Q9BXY8 128 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 PKIBQ9C010 78 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 PPP1R3EQ9H7J1 279 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 ISG20L2Q9H9L3 353 aaKnown RBP9.91□□□□□ -0.82
VPS52-213ENST00000461743 NEK6Q9HC98 313 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 GPR173Q9NS66 373 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 FKBP14Q9NWM8 211 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 RASL12Q9NYN1 266 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 CLN8Q9UBY8 286 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 RSL24D1Q9UHA3 163 aaKnown RBP9.91□□□□□ -0.82
VPS52-213ENST00000461743 PSORS1C1Q9UIG5 152 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 CEPT1Q9Y6K0 416 aa9.91□□□□□ -0.82
VPS52-213ENST00000461743 hCG_2014768A0A024R1R8 64 aa9.9□□□□□ -0.82
VPS52-213ENST00000461743 NKX6-3A6NJ46 265 aa9.9□□□□□ -0.82
VPS52-213ENST00000461743 C3orf80F5H4A9 247 aa9.9□□□□□ -0.82
VPS52-213ENST00000461743 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms