RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 COL8A1P27658 744 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 MRPS11P82912 194 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 DMRTC1Q5HYR2 192 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 ZNF770Q6IQ21 691 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 LINC01356Q8N9X3 169 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 NMNAT2Q9BZQ4 307 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 PEMTQ9UBM1 199 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 TRBV5-4A0A0C4DH59 114 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 H3BMH7 237 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 SPP1P10451 314 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 HTR1DP28221 377 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 CA7P43166 264 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 PCK2Q16822 640 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 OR8G2PQ6IF36 304 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 FAM198BQ6UWH4 519 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 TMEM179BQ7Z7N9 219 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 SUMF1Q8NBK3 374 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 TRIP12Q14669 1992 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 TRBV4-1A0A0J9YWV2 114 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 J3QW42 95 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 PMS2P2O95744 297 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 H2AFB2P0C5Z0 115 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 UCP2P55851 309 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 PRICKLE4Q2TBC4 344 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 RNF220Q5VTB9 566 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 SAXO2Q658L1 398 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 OR1M1Q8NGA1 313 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 LILRB1Q8NHL6 650 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 OR2J1Q9GZK6 312 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 CA10Q9NS85 328 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 A0A1W2PS18 150 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 HMX3A6NHT5 357 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 INMT-MINDY4F8WBC2 141 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 PAPLNO95428 1278 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 CLDN20P56880 219 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 ZNF404Q494X3 552 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 ZNF425Q6IV72 752 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 SSX7Q7RTT5 188 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 VSTM2AQ8TAG5 236 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 CNIH3Q8TBE1 160 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 DVL3Q92997 716 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 MS4A10Q96PG2 267 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 CDIPTO14735 213 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 LILRA1O75019 489 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 TSPAN15O95858 294 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 CYB5R3P00387 301 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 ZBTB25P24278 435 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 TPPP2P59282 170 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 SRSF7Q16629 238 aaKnown RBP eCLIP8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 ANKRD55Q3KP44 614 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 COQ5Q5HYK3 327 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 WDR88Q6ZMY6 472 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 TSPYL5Q86VY4 417 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 OR5M8Q8NGP6 311 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 FRZBQ92765 325 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 PDCD1LG2Q9BQ51 273 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 FKBP11Q9NYL4 201 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 CCL27Q9Y4X3 112 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 AQP7P3A6NL99 342 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 FCMRO60667 390 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 CD40P25942 277 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 ZP4Q12836 540 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 CDK5R2Q13319 367 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 C2orf76Q3KRA6 126 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 TIMM23BQ5SRD1 257 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 ANGPTL4Q9BY76 406 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 SPNS1Q9H2V7 528 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 ZDHHC18Q9NUE0 388 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 CACFD1Q9UGQ2 172 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 ICAM5Q9UMF0 924 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 A0A1W2PNV4 684 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 POM121CA8CG34 1229 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 F5H5P2 479 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 FCGR3BO75015 233 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 CAPNS1P04632 268 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 MGST1P10620 155 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 KIR2DS2P43631 304 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 EMP1P54849 157 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 NDUFA6P56556 154 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 CD69Q07108 199 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 VWA1Q6PCB0 445 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 CNRIP1Q96F85 164 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 C10orf90Q96M02 699 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 VSTM2LQ96N03 204 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 SLC35D1Q9NTN3 355 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 VAPAQ9P0L0 249 aa8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 XIRP1Q702N8 1843 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-202ENST00000381753 ARPC4-TTLL3A0A0A6YYG9 625 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 CSF1P09603 554 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 PAGE3Q5JUK9 113 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 CDH26Q8IXH8 852 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 PAQR8Q8TEZ7 354 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 MAGT1Q9H0U3 335 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 ABCA3Q99758 1704 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 MITFO75030 526 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 SAP30O75446 220 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 HOXB5P09067 269 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 AKAIN1P0CW23 69 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 APELAP0DMC3 54 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms