RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 GIMAP5Q96F15 307 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 OR5B2Q96R09 309 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 MAP3K3Q99759 626 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 FGF22Q9HCT0 170 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 UBQLN4Q9NRR5 601 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 MED29Q9NX70 200 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 PPP4R1LQ9P1A2 415 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 GNG13Q9P2W3 67 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 MOKQ9UQ07 419 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 CNOT1A5YKK6 2376 aaKnown RBP4.88□□□□□ -1.63
LIMA1-203ENST00000547825 PLSCR5A0PG75 271 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 OR5K3A6NET4 321 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 CST7O76096 145 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 AQP8O94778 261 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 IGLV3-19P01714 112 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 GP1BAP07359 652 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 CPN1P15169 458 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF43P17038 809 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 GLRA1P23415 457 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 LAP3P28838 519 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 CRABP1P29762 137 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 BTCP35070 178 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 PLA2G5P39877 138 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 CDKN2AP42771 156 aaKnown RBP4.88□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF41P51814 821 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-203ENST00000547825 EFNB1P98172 346 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 DUSP8Q13202 625 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 ACKR1Q16570 336 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 SGCBQ16585 318 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 HFEQ30201 348 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 STPG1Q5TH74 334 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 TCEAL6Q6IPX3 200 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 TMPPEQ6ZT21 453 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 FAM90A1Q86YD7 464 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF547Q8IVP9 402 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 GPR137CQ8N3F9 429 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF611Q8N823 705 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 LINC01555Q8NAE3 123 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 CCDC54Q8NEL0 328 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 OR51A2Q8NGJ7 313 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 OR5M8Q8NGP6 311 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 OR1S1Q8NH92 325 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 OR51E1Q8TCB6 317 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 RAB7BQ96AH8 199 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 HINT2Q9BX68 163 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 DHCR7Q9UBM7 475 aaKnown RBP4.88□□□□□ -1.63
LIMA1-203ENST00000547825 EXOGQ9Y2C4 368 aaKnown RBP4.88□□□□□ -1.63
LIMA1-203ENST00000547825 A0A1W2PR80 420 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 VSTM2BA6NLU5 285 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 HMSDA8MTL9 139 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 SOX15O60248 233 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 EIF3GO75821 320 aaKnown RBP eCLIP4.87□□□□□ -1.63
LIMA1-203ENST00000547825 HLA-HP01893 362 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 SERPINE2P07093 398 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 F2RL1P55085 397 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 RPS4XP62701 263 aaKnown RBP4.87□□□□□ -1.63
LIMA1-203ENST00000547825 RIPPLY1Q0D2K3 151 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 SERTAD2Q14140 314 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 FAM189A2Q15884 450 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 GUK1Q16774 197 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 ARHGAP11BQ3KRB8 267 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 AWAT1Q58HT5 328 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 WDR38Q5JTN6 314 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 SHEQ5VZ18 495 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 MFSD9Q8NBP5 474 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 OR6K3Q8NGY3 331 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 STT3BQ8TCJ2 826 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 TMEM234Q8WY98 164 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 ROBO4Q8WZ75 1007 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 PHYHIPQ92561 330 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 RRNAD1Q96FB5 475 aaKnown RBP4.87□□□□□ -1.63
LIMA1-203ENST00000547825 SOSTQ9BQB4 213 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF251Q9BRH9 671 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 SAMD10Q9BYL1 202 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 SLC5A6Q9Y289 635 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 SHANK1Q9Y566 2161 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 IGLV3-16A0A075B6K0 115 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 IGHV3-64DA0A0J9YX35 117 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 C7orf77A4D0Y5 90 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 CEBPZOSA8MTT3 80 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 HMGB3O15347 200 aaKnown RBP4.87□□□□□ -1.63
LIMA1-203ENST00000547825 C1QL1O75973 258 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 MPZL1O95297 269 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 SERPINA7P05543 415 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 CD1AP06126 327 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 MMP7P09237 267 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-203ENST00000547825 H2AFB1P0C5Y9 115 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 FOLR1P15328 257 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 ABOP16442 354 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 RCC1P18754 421 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-203ENST00000547825 MTCP1P56278 107 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 NANOS3P60323 173 aaKnown RBP4.87□□□□□ -1.63
LIMA1-203ENST00000547825 INPP5JQ15735 1006 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-203ENST00000547825 MLF2Q15773 248 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-203ENST00000547825 TAF9Q16594 264 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF658BQ4V348 819 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-203ENST00000547825 ELFN2Q5R3F8 820 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 ATPAF1Q5TC12 328 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-203ENST00000547825 C9orf135Q5VTT2 229 aa4.87□□□□□ -1.63
LIMA1-203ENST00000547825 OR5AP2Q8NGF4 316 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms