RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 KCNJ16Q9NPI9 418 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 DKKL1Q9UK85 242 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 ATXN7L1Q9ULK2 861 aaPredicted RBP4.67□□□□□ -1.66
USP28-213ENST00000544967 SLC7A7Q9UM01 511 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 RPH3ALQ9UNE2 315 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 GPR55Q9Y2T6 319 aaPredicted RBP4.67□□□□□ -1.66
USP28-213ENST00000544967 POLR3KQ9Y2Y1 108 aaPredicted RBP4.67□□□□□ -1.66
USP28-213ENST00000544967 MRPS18CQ9Y3D5 142 aaKnown RBP4.67□□□□□ -1.66
USP28-213ENST00000544967 GOLT1BQ9Y3E0 138 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 ZDBF2Q9HCK1 2354 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 TRBV24-1A0A075B6N3 115 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 FIGNL2A6NMB9 653 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 ZNF726A6NNF4 738 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 UMAD1C9J7I0 102 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 C9JQL5 133 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 PHOX2AO14813 284 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 UPK3AO75631 287 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 DFFBO76075 338 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 ZFPL1O95159 310 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 NSA2O95478 260 aaKnown RBP4.66□□□□□ -1.66
USP28-213ENST00000544967 EML2O95834 649 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 TSPAN15O95858 294 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 TBX6O95947 436 aaPredicted RBP4.66□□□□□ -1.66
USP28-213ENST00000544967 MAKP20794 623 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 IL2RGP31785 369 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 CCKARP32238 428 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 PNRC1Q12796 327 aaPredicted RBP4.66□□□□□ -1.66
USP28-213ENST00000544967 PPP1R1AQ13522 171 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 ARHGAP40Q5TG30 622 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 MDGA2Q7Z553 956 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 TMPRSS12Q86WS5 348 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 HOGA1Q86XE5 327 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 FAM24BQ8N5W8 94 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 POC1AQ8NBT0 407 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 RNASE8Q8TDE3 154 aaKnown RBP4.66□□□□□ -1.66
USP28-213ENST00000544967 BPIFA2Q96DR5 249 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 MS4A6EQ96DS6 147 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 SLC25A31Q9H0C2 315 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 TMEM231Q9H6L2 316 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 CHST11Q9NPF2 352 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 CD84Q9UIB8 345 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 VAX2Q9UIW0 290 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 GNG8Q9UK08 70 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 TMEM14AQ9Y6G1 99 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 KIR2DL5BA0A0G2JN68 375 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 KIR2DL5BA0A0G2JPC4 375 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 TP53I11O14683 189 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 NDUFS4O43181 175 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 YIF1AO95070 293 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 NDUFB2O95178 105 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 SFT2D2O95562 160 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 DDAH2O95865 285 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 CHRM2P08172 466 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 FUT1P19526 365 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 TDGF1P3P51864 188 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 SRSF2Q01130 221 aaKnown RBP4.66□□□□□ -1.66
USP28-213ENST00000544967 PLA2G7Q13093 441 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 ELOBQ15370 118 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 TMEM241Q24JQ0 296 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 RSPO4Q2I0M5 234 aaPredicted RBP4.66□□□□□ -1.66
USP28-213ENST00000544967 C1orf100Q5SVJ3 147 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 SP5Q6BEB4 398 aaPredicted RBP4.66□□□□□ -1.66
USP28-213ENST00000544967 LINC00114Q6XXX2 140 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 ZNF836Q6ZNA1 936 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 Q6ZRG5 221 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 SLC25A26Q70HW3 274 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 ADGRE4PQ86SQ3 457 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 KIR2DL5AQ8N109 375 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 EXD3Q8N9H8 876 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 RNF128Q8TEB7 428 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 SECTM1Q8WVN6 248 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 CFHR4Q92496 578 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 FAM3DQ96BQ1 224 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 NTNG2Q96CW9 530 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 NEIL1Q96FI4 390 aaPredicted RBP4.66□□□□□ -1.66
USP28-213ENST00000544967 ACY3Q96HD9 319 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 PACRGQ96M98 296 aaPredicted RBP4.66□□□□□ -1.66
USP28-213ENST00000544967 SPSB2Q99619 263 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 RAB11FIP5Q9BXF6 653 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 OR8D2Q9GZM6 311 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 ZNF350Q9GZX5 532 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 OPN3Q9H1Y3 402 aaPredicted RBP4.66□□□□□ -1.66
USP28-213ENST00000544967 OR2AG1Q9H205 316 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 MED20Q9H944 212 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 ASCL3Q9NQ33 180 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 LHX9Q9NQ69 397 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 MRPS33Q9Y291 106 aaKnown RBP4.66□□□□□ -1.66
USP28-213ENST00000544967 ARID1BQ8NFD5 2236 aaPredicted RBP4.66□□□□□ -1.66
USP28-213ENST00000544967 DCHS1Q96JQ0 3298 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 TRAV18A0A075B6X5 111 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 OR4C45A6NMZ5 311 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 H0YIZ8 118 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 M0R036 132 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 BNIP3LO60238 219 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 TK1P04183 234 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 HMGN2P05204 90 aaKnown RBP4.66□□□□□ -1.66
USP28-213ENST00000544967 CAPZBP47756 277 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 GLIPR1P48060 266 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 NDUFA6P56556 154 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 ERVFC1-1P60608 527 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms