RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 CCL3L1P16619 93 aa16.36■□□□□ 0.21
SQSTM1-215ENST00000514093 VDAC2P45880 294 aaPredicted RBP16.36■□□□□ 0.21
SQSTM1-215ENST00000514093 ENTPD1P49961 510 aa16.36■□□□□ 0.21
SQSTM1-215ENST00000514093 TMEM200BQ69YZ2 307 aa16.36■□□□□ 0.21
SQSTM1-215ENST00000514093 ZNF782Q6ZMW2 699 aaPredicted RBP16.36■□□□□ 0.21
SQSTM1-215ENST00000514093 FAM86B1Q8N7N1 296 aa16.36■□□□□ 0.21
SQSTM1-215ENST00000514093 OR2T4Q8NH00 348 aa16.36■□□□□ 0.21
SQSTM1-215ENST00000514093 OR5P3Q8WZ94 311 aa16.36■□□□□ 0.21
SQSTM1-215ENST00000514093 RCC1LQ96I51 464 aaKnown RBP16.36■□□□□ 0.21
SQSTM1-215ENST00000514093 RNF170Q96K19 258 aa16.36■□□□□ 0.21
SQSTM1-215ENST00000514093 DHRS1Q96LJ7 313 aa16.36■□□□□ 0.21
SQSTM1-215ENST00000514093 ABCB10Q9NRK6 738 aa16.36■□□□□ 0.21
SQSTM1-215ENST00000514093 AP3M1Q9Y2T2 418 aa16.36■□□□□ 0.21
SQSTM1-215ENST00000514093 DHRS12A0PJE2 317 aa16.35■□□□□ 0.21
SQSTM1-215ENST00000514093 FAM90A8PA6NJQ4 464 aa16.35■□□□□ 0.21
SQSTM1-215ENST00000514093 GYPBP06028 91 aa16.35■□□□□ 0.21
SQSTM1-215ENST00000514093 HSD11B1P28845 292 aa16.35■□□□□ 0.21
SQSTM1-215ENST00000514093 KRT72Q14CN4 511 aa16.35■□□□□ 0.21
SQSTM1-215ENST00000514093 PRSS45Q7RTY3 260 aa16.35■□□□□ 0.21
SQSTM1-215ENST00000514093 CSNK2A3Q8NEV1 391 aa16.35■□□□□ 0.21
SQSTM1-215ENST00000514093 OR4M1Q8NGD0 313 aa16.35■□□□□ 0.21
SQSTM1-215ENST00000514093 OR5K1Q8NHB7 308 aa16.35■□□□□ 0.21
SQSTM1-215ENST00000514093 PIGCQ92535 297 aa16.35■□□□□ 0.21
SQSTM1-215ENST00000514093 EGLN3Q9H6Z9 239 aa16.35■□□□□ 0.21
SQSTM1-215ENST00000514093 INPP5EQ9NRR6 644 aa16.35■□□□□ 0.21
SQSTM1-215ENST00000514093 ZNF222Q9UK12 451 aa16.35■□□□□ 0.21
SQSTM1-215ENST00000514093 MPC1Q9Y5U8 109 aa16.35■□□□□ 0.21
SQSTM1-215ENST00000514093 TMEM210A6NLX4 147 aa16.34■□□□□ 0.21
SQSTM1-215ENST00000514093 JUNBP17275 347 aaPredicted RBP16.34■□□□□ 0.21
SQSTM1-215ENST00000514093 PAICSP22234 425 aaKnown RBP16.34■□□□□ 0.21
SQSTM1-215ENST00000514093 ACKR3P25106 362 aa16.34■□□□□ 0.21
SQSTM1-215ENST00000514093 FMO3P31513 532 aa16.34■□□□□ 0.21
SQSTM1-215ENST00000514093 DCTDP32321 178 aa16.34■□□□□ 0.21
SQSTM1-215ENST00000514093 SLC15A1P46059 708 aa16.34■□□□□ 0.21
SQSTM1-215ENST00000514093 ZNF121P58317 390 aaPredicted RBP16.34■□□□□ 0.21
SQSTM1-215ENST00000514093 RPL31P62899 125 aaKnown RBP16.34■□□□□ 0.21
SQSTM1-215ENST00000514093 GRB2P62993 217 aaKnown RBP16.34■□□□□ 0.21
SQSTM1-215ENST00000514093 SPIBQ01892 262 aa16.34■□□□□ 0.21
SQSTM1-215ENST00000514093 SSX2Q16385 188 aa16.34■□□□□ 0.21
SQSTM1-215ENST00000514093 TCTEX1D4Q5JR98 221 aa16.34■□□□□ 0.21
SQSTM1-215ENST00000514093 ARPINQ7Z6K5 226 aa16.34■□□□□ 0.21
SQSTM1-215ENST00000514093 RPS4Y2Q8TD47 263 aa16.34■□□□□ 0.21
SQSTM1-215ENST00000514093 HPSE2Q8WWQ2 592 aa16.34■□□□□ 0.21
SQSTM1-215ENST00000514093 EPPK1P58107 5090 aaKnown RBP16.33■□□□□ 0.21
SQSTM1-215ENST00000514093 TCRBV4S1A1TA0A5B7 111 aa16.33■□□□□ 0.2
SQSTM1-215ENST00000514093 SYNGR1O43759 233 aa16.33■□□□□ 0.2
SQSTM1-215ENST00000514093 GADD45GO95257 159 aa16.33■□□□□ 0.2
SQSTM1-215ENST00000514093 EGFEM1PQ0D2K5 195 aa16.33■□□□□ 0.2
SQSTM1-215ENST00000514093 EIF2B1Q14232 305 aaKnown RBP16.33■□□□□ 0.2
SQSTM1-215ENST00000514093 FAM76BQ5HYJ3 339 aa16.33■□□□□ 0.2
SQSTM1-215ENST00000514093 LDLRAD2Q5SZI1 272 aa16.33■□□□□ 0.2
SQSTM1-215ENST00000514093 SLC37A3Q8NCC5 494 aa16.33■□□□□ 0.2
SQSTM1-215ENST00000514093 PGAM5Q96HS1 289 aa16.33■□□□□ 0.2
SQSTM1-215ENST00000514093 OR10A2Q9H208 303 aa16.33■□□□□ 0.2
SQSTM1-215ENST00000514093 V9GYQ6 96 aa16.33■□□□□ 0.2
SQSTM1-215ENST00000514093 RYR2Q92736 4967 aa16.33■□□□□ 0.2
SQSTM1-215ENST00000514093 E9PQ18 207 aa16.32■□□□□ 0.2
SQSTM1-215ENST00000514093 ARG1P05089 322 aa16.32■□□□□ 0.2
SQSTM1-215ENST00000514093 CLUP10909 449 aa16.32■□□□□ 0.2
SQSTM1-215ENST00000514093 CFL1P23528 166 aaKnown RBP16.32■□□□□ 0.2
SQSTM1-215ENST00000514093 GSSP48637 474 aa16.32■□□□□ 0.2
SQSTM1-215ENST00000514093 GPM6AP51674 278 aa16.32■□□□□ 0.2
SQSTM1-215ENST00000514093 SLC25A1P53007 311 aa16.32■□□□□ 0.2
SQSTM1-215ENST00000514093 ZNF273Q14593 569 aa16.32■□□□□ 0.2
SQSTM1-215ENST00000514093 DMRTC1Q5HYR2 192 aa16.32■□□□□ 0.2
SQSTM1-215ENST00000514093 TIGD4Q8IY51 512 aa16.32■□□□□ 0.2
SQSTM1-215ENST00000514093 FTMTQ8N4E7 242 aa16.32■□□□□ 0.2
SQSTM1-215ENST00000514093 OR52H1Q8NGJ2 320 aa16.32■□□□□ 0.2
SQSTM1-215ENST00000514093 SDSLQ96GA7 329 aa16.32■□□□□ 0.2
SQSTM1-215ENST00000514093 PITPNC1Q9UKF7 332 aa16.32■□□□□ 0.2
SQSTM1-215ENST00000514093 TEX30Q5JUR7 227 aa16.31■□□□□ 0.2
SQSTM1-215ENST00000514093 THAP5Q7Z6K1 395 aa16.31■□□□□ 0.2
SQSTM1-215ENST00000514093 CENPVQ7Z7K6 275 aaPredicted RBP16.31■□□□□ 0.2
SQSTM1-215ENST00000514093 CD177Q8N6Q3 437 aa16.31■□□□□ 0.2
SQSTM1-215ENST00000514093 OR6K6Q8NGW6 343 aa16.31■□□□□ 0.2
SQSTM1-215ENST00000514093 OR2T27Q8NH04 317 aa16.31■□□□□ 0.2
SQSTM1-215ENST00000514093 KCTD14Q9BQ13 255 aaPredicted RBP16.31■□□□□ 0.2
SQSTM1-215ENST00000514093 MRGBPQ9NV56 204 aa16.31■□□□□ 0.2
SQSTM1-215ENST00000514093 USE1Q9NZ43 259 aa16.31■□□□□ 0.2
SQSTM1-215ENST00000514093 TSSC4Q9Y5U2 329 aaPredicted RBP16.31■□□□□ 0.2
SQSTM1-215ENST00000514093 A0A1W2PPH5 198 aa16.3■□□□□ 0.2
SQSTM1-215ENST00000514093 RFPL4AA6NLU0 287 aa16.3■□□□□ 0.2
SQSTM1-215ENST00000514093 RFPL4AL1F8VTS6 287 aa16.3■□□□□ 0.2
SQSTM1-215ENST00000514093 DUS4LO95620 317 aaKnown RBP16.3■□□□□ 0.2
SQSTM1-215ENST00000514093 CST4P01036 141 aa16.3■□□□□ 0.2
SQSTM1-215ENST00000514093 CEBPDP49716 269 aaPredicted RBP16.3■□□□□ 0.2
SQSTM1-215ENST00000514093 ZDHHC23Q8IYP9 409 aa16.3■□□□□ 0.2
SQSTM1-215ENST00000514093 GNPDA2Q8TDQ7 276 aa16.3■□□□□ 0.2
SQSTM1-215ENST00000514093 MYDGFQ969H8 173 aa16.3■□□□□ 0.2
SQSTM1-215ENST00000514093 MALSU1Q96EH3 234 aa16.3■□□□□ 0.2
SQSTM1-215ENST00000514093 AMELYQ99218 206 aa16.3■□□□□ 0.2
SQSTM1-215ENST00000514093 CD300AQ9UGN4 299 aa16.3■□□□□ 0.2
SQSTM1-215ENST00000514093 LRP12Q9Y561 859 aa16.3■□□□□ 0.2
SQSTM1-215ENST00000514093 hCG_1809904A0A1W2PP81 198 aa16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 A0A1W2PPE2 198 aa16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 A0A1W2PR64 198 aa16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 A0A1W2PRV1 198 aa16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 MEX3AA1L020 520 aaKnown RBP16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 ZNF732B4DXR9 585 aa16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 ALDOBP05062 364 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms