RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 SSX1Q16384 188 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 HFEQ30201 348 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 ACSM3Q53FZ2 586 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 Q5PR19 223 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 TMEM42Q69YG0 159 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 UTS2BQ765I0 119 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 CELF2-AS1Q8N7Q2 184 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 OR5A2Q8NGI9 324 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 ZNF420Q8TAQ5 688 aaPredicted RBP12.67□□□□□ -0.38
NUP54-213ENST00000513352 CCL17Q92583 94 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 THRSPQ92748 146 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 MUL1Q969V5 352 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 ORAI1Q96D31 301 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 TECTBQ96PL2 329 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 MRPS26Q9BYN8 205 aaKnown RBP12.67□□□□□ -0.38
NUP54-213ENST00000513352 ZCCHC4Q9H5U6 513 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 FN3KRPQ9HA64 309 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 NEK6Q9HC98 313 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 CKLFQ9UBR5 152 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 CACNG2Q9Y698 323 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 NBPF19A0A087WUL8 3843 aa12.66□□□□□ -0.38
NUP54-213ENST00000513352 OR5B21A6NL26 309 aa12.66□□□□□ -0.38
NUP54-213ENST00000513352 TMEM210A6NLX4 147 aa12.66□□□□□ -0.38
NUP54-213ENST00000513352 HCKP08631 526 aa12.66□□□□□ -0.38
NUP54-213ENST00000513352 IRF2P14316 349 aa12.66□□□□□ -0.38
NUP54-213ENST00000513352 RAB3AP20336 220 aa12.66□□□□□ -0.38
NUP54-213ENST00000513352 PRKACBP22694 351 aa12.66□□□□□ -0.38
NUP54-213ENST00000513352 COL8A2P25067 703 aa12.66□□□□□ -0.38
NUP54-213ENST00000513352 PSMA1P25786 263 aaKnown RBP12.66□□□□□ -0.38
NUP54-213ENST00000513352 GP2P55259 537 aaKnown RBP12.66□□□□□ -0.38
NUP54-213ENST00000513352 MPPED2Q15777 294 aa12.66□□□□□ -0.38
NUP54-213ENST00000513352 CLEC12BQ2HXU8 276 aa12.66□□□□□ -0.38
NUP54-213ENST00000513352 CEACAM19Q7Z692 300 aa12.66□□□□□ -0.38
NUP54-213ENST00000513352 TGIF2LYQ8IUE0 185 aa12.66□□□□□ -0.38
NUP54-213ENST00000513352 PARP16Q8N5Y8 322 aa12.66□□□□□ -0.38
NUP54-213ENST00000513352 BOLLQ8N9W6 283 aaKnown RBP12.66□□□□□ -0.38
NUP54-213ENST00000513352 OR1M1Q8NGA1 313 aa12.66□□□□□ -0.38
NUP54-213ENST00000513352 OR11L1Q8NGX0 322 aa12.66□□□□□ -0.38
NUP54-213ENST00000513352 FAM168AQ92567 244 aa12.66□□□□□ -0.38
NUP54-213ENST00000513352 RPL3LQ92901 407 aaKnown RBP12.66□□□□□ -0.38
NUP54-213ENST00000513352 YIPF5Q969M3 257 aa12.66□□□□□ -0.38
NUP54-213ENST00000513352 BORCS8Q96FH0 119 aa12.66□□□□□ -0.38
NUP54-213ENST00000513352 DERL3Q96Q80 235 aa12.66□□□□□ -0.38
NUP54-213ENST00000513352 FGF23Q9GZV9 251 aaPredicted RBP12.66□□□□□ -0.38
NUP54-213ENST00000513352 MYOZ1Q9NP98 299 aaPredicted RBP12.66□□□□□ -0.38
NUP54-213ENST00000513352 NOX4Q9NPH5 578 aa12.66□□□□□ -0.38
NUP54-213ENST00000513352 C1orf123Q9NWV4 160 aa12.66□□□□□ -0.38
NUP54-213ENST00000513352 NDUFB11Q9NX14 153 aa12.66□□□□□ -0.38
NUP54-213ENST00000513352 CCDC168Q8NDH2 2452 aa12.66□□□□□ -0.38
NUP54-213ENST00000513352 SETXQ7Z333 2677 aaKnown RBP12.65□□□□□ -0.38
NUP54-213ENST00000513352 LRP5LA4QPB2 252 aa12.65□□□□□ -0.38
NUP54-213ENST00000513352 MAGEB3O15480 346 aa12.65□□□□□ -0.38
NUP54-213ENST00000513352 SULT1B1O43704 296 aa12.65□□□□□ -0.38
NUP54-213ENST00000513352 PLATP00750 562 aa12.65□□□□□ -0.38
NUP54-213ENST00000513352 CSF3P09919 207 aa12.65□□□□□ -0.38
NUP54-213ENST00000513352 AZGP1P25311 298 aaKnown RBP12.65□□□□□ -0.38
NUP54-213ENST00000513352 RBMXP38159 391 aaKnown RBP12.65□□□□□ -0.38
NUP54-213ENST00000513352 CRYBB2P43320 205 aa12.65□□□□□ -0.38
NUP54-213ENST00000513352 FUT6P51993 359 aa12.65□□□□□ -0.38
NUP54-213ENST00000513352 ZNF154Q13106 437 aa12.65□□□□□ -0.38
NUP54-213ENST00000513352 KRT74Q7RTS7 529 aa12.65□□□□□ -0.38
NUP54-213ENST00000513352 WDR86Q86TI4 376 aa12.65□□□□□ -0.38
NUP54-213ENST00000513352 SATL1Q86VE3 508 aa12.65□□□□□ -0.38
NUP54-213ENST00000513352 RFT1Q96AA3 541 aa12.65□□□□□ -0.38
NUP54-213ENST00000513352 SPACA5Q96QH8 159 aa12.65□□□□□ -0.38
NUP54-213ENST00000513352 FOXC2Q99958 501 aa12.65□□□□□ -0.38
NUP54-213ENST00000513352 GCM1Q9NP62 436 aa12.65□□□□□ -0.38
NUP54-213ENST00000513352 EXOSC4Q9NPD3 245 aaKnown RBP12.65□□□□□ -0.38
NUP54-213ENST00000513352 DLL4Q9NR61 685 aa12.65□□□□□ -0.38
NUP54-213ENST00000513352 PDZD2O15018 2839 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 TRBV5-7A0A0A0MS05 114 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 IGKV1-9A0A0C4DH69 117 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 PQLC2LA1A4F0 135 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 LRRC30A6NM36 301 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 CYSRT1A8MQ03 144 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 CLDN25C9JDP6 229 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 GABRPO00591 440 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 PPIHO43447 177 aaKnown RBP12.64□□□□□ -0.39
NUP54-213ENST00000513352 CYB5R3P00387 301 aaPredicted RBP12.64□□□□□ -0.39
NUP54-213ENST00000513352 TGFBR2P37173 567 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 HAAOP46952 286 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 POU3F4P49335 361 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 ATP1B3P54709 279 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 GMFBP60983 142 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 MRPS11P82912 194 aaKnown RBP12.64□□□□□ -0.39
NUP54-213ENST00000513352 FABP5Q01469 135 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 FAM27D1Q5T7N8 215 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 SYT6Q5T7P8 510 aaPredicted RBP12.64□□□□□ -0.39
NUP54-213ENST00000513352 HAGHLQ6PII5 290 aaPredicted RBP12.64□□□□□ -0.39
NUP54-213ENST00000513352 ZNF826PQ6ZT77 177 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 LHFPL2Q6ZUX7 228 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 ZNF573Q86YE8 665 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 HPS1Q92902 700 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 SPSB1Q96BD6 273 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 PIMREGQ9BSJ6 248 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 CHODLQ9H9P2 273 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 TCF7L1Q9HCS4 588 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 TMEM106BQ9NUM4 274 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 DCAF16Q9NXF7 216 aa12.64□□□□□ -0.39
NUP54-213ENST00000513352 SF3B6Q9Y3B4 125 aaKnown RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms