RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 FAM107AO95990 144 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 ACAA1P09110 424 aaPredicted RBP5.83□□□□□ -1.48
VPS41-208ENST00000448833 CLUP10909 449 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 GLRA1P23415 457 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 UBE2E1P51965 193 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 RPS7P62081 194 aaKnown RBP5.83□□□□□ -1.48
VPS41-208ENST00000448833 CDK5Q00535 292 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 RIPPLY1Q0D2K3 151 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 PPP1R8Q12972 351 aaKnown RBP5.83□□□□□ -1.48
VPS41-208ENST00000448833 PRDX4Q13162 271 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 GINS1Q14691 196 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 TAF9Q16594 264 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 CEACAM21Q3KPI0 293 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 MIDNQ504T8 468 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 KLHL12Q53G59 568 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 RUSC1-AS1Q66K80 236 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 STUMQ69YW2 141 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 DHRS7BQ6IAN0 325 aaPredicted RBP5.83□□□□□ -1.48
VPS41-208ENST00000448833 PLBD1Q6P4A8 553 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 LYPD4Q6UWN0 246 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 ZNF788Q6ZQV5 615 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 KRT74Q7RTS7 529 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 ZSCAN4Q8NAM6 433 aaPredicted RBP5.83□□□□□ -1.48
VPS41-208ENST00000448833 H1FXQ92522 213 aaKnown RBP5.83□□□□□ -1.48
VPS41-208ENST00000448833 PIGCQ92535 297 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 UBE2FQ969M7 185 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 NRBF2Q96F24 287 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 RAB3IPQ96QF0 476 aaPredicted RBP5.83□□□□□ -1.48
VPS41-208ENST00000448833 MNTQ99583 582 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 PKP2Q99959 881 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 NIPSNAP1Q9BPW8 284 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 DCTN5Q9BTE1 182 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 MMP27Q9H306 513 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 C16orf95Q9H693 158 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 RAB18Q9NP72 206 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 TNFRSF19Q9NS68 423 aa5.83□□□□□ -1.48
VPS41-208ENST00000448833 PDP1Q9P0J1 537 aaPredicted RBP5.83□□□□□ -1.48
VPS41-208ENST00000448833 H2AFY2Q9P0M6 372 aaPredicted RBP5.83□□□□□ -1.48
VPS41-208ENST00000448833 SLC25A10Q9UBX3 287 aaPredicted RBP5.83□□□□□ -1.48
VPS41-208ENST00000448833 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.83□□□□□ -1.48
VPS41-208ENST00000448833 SF3B6Q9Y3B4 125 aaKnown RBP5.83□□□□□ -1.48
VPS41-208ENST00000448833 A0A0U1RQK1 487 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 A0A1W2PQ09 198 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 ANKRD61A6NGH8 418 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 SLC1A7O00341 560 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 ACOT8O14734 319 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 SIGLEC5O15389 551 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 GYG2O15488 501 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 IGHV4-59P01825 116 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 NDUFB7P17568 137 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 ALOX5APP20292 161 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 MS4A2Q01362 244 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 DBPQ10586 325 aaPredicted RBP5.82□□□□□ -1.48
VPS41-208ENST00000448833 POU4F2Q12837 409 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 IKZF1Q13422 519 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 SNAPC1Q16533 368 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 AANATQ16613 207 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 SMIM21Q3B7S5 101 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 ZNF829Q3KNS6 432 aaPredicted RBP5.82□□□□□ -1.48
VPS41-208ENST00000448833 DNAL1Q4LDG9 190 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 COMMD2Q86X83 199 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 ZNF573Q86YE8 665 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 CPOQ8IVL8 374 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 ZNF679Q8IYX0 411 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 LINC01006Q8NI28 216 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 ANGPTL6Q8NI99 470 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 TEAD3Q99594 435 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 THTPAQ9BU02 230 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 HEXA-AS1Q9H8Q6 139 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 MED20Q9H944 212 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 TCF7L1Q9HCS4 588 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 TAS2R1Q9NYW7 299 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 NLKQ9UBE8 527 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 DNAJB9Q9UBS3 223 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 ENOPH1Q9UHY7 261 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 ENPP5Q9UJA9 477 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 VPREB3Q9UKI3 123 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 POLDIP2Q9Y2S7 368 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 LRP12Q9Y561 859 aa5.82□□□□□ -1.48
VPS41-208ENST00000448833 SOX21Q9Y651 276 aaPredicted RBP5.82□□□□□ -1.48
VPS41-208ENST00000448833 TET2Q6N021 2002 aaPredicted RBP5.82□□□□□ -1.48
VPS41-208ENST00000448833 TRRAPQ9Y4A5 3859 aa5.81□□□□□ -1.48
VPS41-208ENST00000448833 MEIOCA2RUB1 952 aa5.81□□□□□ -1.48
VPS41-208ENST00000448833 C5orf63A6NC05 138 aa5.81□□□□□ -1.48
VPS41-208ENST00000448833 DHRS7CA6NNS2 312 aa5.81□□□□□ -1.48
VPS41-208ENST00000448833 ZNF732B4DXR9 585 aa5.81□□□□□ -1.48
VPS41-208ENST00000448833 H0YAE9 185 aa5.81□□□□□ -1.48
VPS41-208ENST00000448833 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.81□□□□□ -1.48
VPS41-208ENST00000448833 TSPAN9O75954 239 aa5.81□□□□□ -1.48
VPS41-208ENST00000448833 PSKH1P11801 424 aa5.81□□□□□ -1.48
VPS41-208ENST00000448833 GABRA2P47869 451 aa5.81□□□□□ -1.48
VPS41-208ENST00000448833 SMCPP49901 116 aaPredicted RBP5.81□□□□□ -1.48
VPS41-208ENST00000448833 GPM6AP51674 278 aa5.81□□□□□ -1.48
VPS41-208ENST00000448833 RIDAP52758 137 aaKnown RBP5.81□□□□□ -1.48
VPS41-208ENST00000448833 LGALS4P56470 323 aa5.81□□□□□ -1.48
VPS41-208ENST00000448833 PROK1P58294 105 aa5.81□□□□□ -1.48
VPS41-208ENST00000448833 ESRRGP62508 458 aa5.81□□□□□ -1.48
VPS41-208ENST00000448833 CSNK2BP67870 215 aa5.81□□□□□ -1.48
VPS41-208ENST00000448833 DEFA6Q01524 100 aa5.81□□□□□ -1.48
VPS41-208ENST00000448833 ROM1Q03395 351 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 97.9 ms