RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 PRSS12P56730 875 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 UNQ5815/PRO19632Q6UWF5 114 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 IL22RA2Q969J5 263 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 ZNF714Q96N38 554 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 GAR1Q9NY12 217 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 DLL3Q9NYJ7 618 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 TMED3Q9Y3Q3 217 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 KNL1Q8NG31 2342 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 PRKYO43930 277 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 COX7A2P2O60397 106 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 C1QAP02745 245 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 ADRA2CP18825 462 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 UBE2G1P62253 170 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 MEF2DQ14814 521 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 SPHARQ15513 63 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 PXDC1Q5TGL8 231 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 NKAIN3Q8N8D7 197 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 ITLN1Q8WWA0 313 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 ZCCHC4Q9H5U6 513 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 PSG11Q9UQ72 335 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 GPR55Q9Y2T6 319 aaPredicted RBP8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 CACNG2Q9Y698 323 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 ZDBF2Q9HCK1 2354 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 A0A0A6YYD5 115 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 SPRY1O43609 319 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 NUTF2P61970 127 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 TNK1Q13470 666 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 ACTBL2Q562R1 376 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 TMEM81Q6P7N7 255 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 B3GLCTQ6Y288 498 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 MAMSTRQ6ZN01 415 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 MRGPRDQ8TDS7 321 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 ITPKCQ96DU7 683 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 OR51E2Q9H255 320 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 ST3GAL6Q9Y274 331 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 J3KRW8 73 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 CYTIPO60759 359 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 EPPINO95925 133 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 HBG1P69891 147 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 HBG2P69892 147 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 MESP2Q0VG99 397 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 GAMTQ14353 236 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 GPNMBQ14956 572 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 STEAP1BQ6NZ63 245 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 DHRS4L2Q6PKH6 230 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 ARHGEF39Q8N4T4 335 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 TIMP4Q99727 224 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 LIN7CQ9NUP9 197 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 PRSS50Q9UI38 385 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 TRAPPC4Q9Y296 219 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 MPC1Q9Y5U8 109 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 B4DSR2 109 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 SULT1B1O43704 296 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 HLA-DMAP28067 261 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 SRPXP78539 464 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 ZNF816Q0VGE8 651 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 ALKBH1Q13686 389 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 TBPL2Q6SJ96 375 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 TAMM41Q96BW9 452 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 HYLS1Q96M11 299 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 TAS2R3Q9NYW6 316 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 MAB21L2Q9Y586 359 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 LOC107986453A0A1B0GWG9 222 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 ZNF14P17017 642 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 AQP4P55087 323 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 STARD4Q96DR4 205 aa8.13□□□□□ -1.11
LIMCH1-202ENST00000381753 PPP6CO00743 305 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 GAPDHP04406 335 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 SBK3P0C264 359 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 CALCRP30988 508 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 CYCSP99999 105 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 DGAT2L7PQ6IED9 249 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 OSR2Q8N2R0 312 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 BBS1Q8NFJ9 593 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 UBALD1Q8TB05 177 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 MRAPQ8TCY5 172 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 TMEM106AQ96A25 262 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 PRRT1Q99946 306 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 ZNF835Q9Y2P0 537 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 COL4A5P29400 1685 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 FAM221AA4D161 298 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 ZNF705EA8MWA4 302 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 NPY1RP25929 384 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 DUSP1P28562 367 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 SELENOPP49908 381 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 MMP15P51511 669 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 SPRED3Q2MJR0 410 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 PHLDA2Q53GA4 152 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 COX20Q5RI15 118 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 ADPRHL1Q8NDY3 354 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 OR4F17Q8NGA8 305 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 ALG14Q96F25 216 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 SCARF2Q96GP6 870 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 OR4F4Q96R69 305 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 UCN2Q96RP3 112 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 UBQLN2Q9UHD9 624 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 OR5B21A6NL26 309 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 E7ESA3 106 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 ZNHIT1O43257 154 aa8.12□□□□□ -1.11
LIMCH1-202ENST00000381753 TXNDC12O95881 172 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms