RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 LINC00052Q96N35 136 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 ALKBH3Q96Q83 286 aaPredicted RBP3.62□□□□□ -1.83
USH2A-202ENST00000366942 CLEC7AQ9BXN2 247 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 WDR61Q9GZS3 305 aaKnown RBP3.62□□□□□ -1.83
USH2A-202ENST00000366942 MYO18BQ8IUG5 2567 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 ZC3H12DA2A288 527 aaKnown RBP3.62□□□□□ -1.83
USH2A-202ENST00000366942 ADAM10O14672 748 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 COX7A2P2O60397 106 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 TFAP2AP05549 437 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 BSGP35613 385 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 CCL8P80075 99 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 MRPS10P82664 201 aaKnown RBP3.62□□□□□ -1.83
USH2A-202ENST00000366942 DGCR6Q14129 220 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 FAM162BQ5T6X4 162 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 C8orf86Q6ZUL3 223 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 SLC22A24Q8N4F4 322 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 ZNF781Q8N8C0 355 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 TFAP2CQ92754 450 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 CMBLQ96DG6 245 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 ACKR4Q9NPB9 350 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 SIX2Q9NPC8 291 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 MYEF2Q9P2K5 600 aaKnown RBP3.62□□□□□ -1.83
USH2A-202ENST00000366942 NUBP2Q9Y5Y2 271 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 LOC102724200A0A096LPH7 203 aaPredicted RBP3.62□□□□□ -1.83
USH2A-202ENST00000366942 C9JCJ5 164 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 AIPO00170 330 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 TSC22D2O75157 780 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 ZDHHC11BP0C7U3 371 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 RAB5AP20339 215 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 OMGP23515 440 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 CD68P34810 354 aaPredicted RBP3.62□□□□□ -1.83
USH2A-202ENST00000366942 CDKN2CP42773 168 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 DIO1P49895 249 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 TPPP2P59282 170 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 UBE2IP63279 158 aaKnown RBP3.62□□□□□ -1.83
USH2A-202ENST00000366942 DGCR2P98153 550 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 NSUN5P2Q63ZY6 315 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 LPCAT4Q643R3 524 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 ZNF322Q6U7Q0 402 aaPredicted RBP3.62□□□□□ -1.83
USH2A-202ENST00000366942 CLVS1Q8IUQ0 354 aaPredicted RBP3.62□□□□□ -1.83
USH2A-202ENST00000366942 NRMQ8IXM6 262 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 SLC35F2Q8IXU6 374 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 AQP11Q8NBQ7 271 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 OR4S2Q8NH73 311 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 SLC35B2Q8TB61 432 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 SPSB1Q96BD6 273 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 TMEM101Q96IK0 257 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 OR7D2Q96RA2 312 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 SPSB2Q99619 263 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 EMC6Q9BV81 110 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 OR51M1Q9H341 326 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 NUDT15Q9NV35 164 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 DPM3Q9P2X0 92 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 POLEQ07864 2286 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 ZNF724A8MTY0 619 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 H7C1H1 209 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 BMPR1BO00238 502 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 SDHAP31040 664 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 JAG1P78504 1218 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 KIAA1644Q3SXP7 199 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 MIDNQ504T8 468 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 TECRLQ5HYJ1 363 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 COLCA1Q6ZS62 124 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 WDFY1Q8IWB7 410 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 MMD2Q8IY49 270 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 DOK4Q8TEW6 326 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 BLNKQ8WV28 456 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 PP6455Q8WZ26 134 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 DIRAS2Q96HU8 199 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 PRSS27Q9BQR3 290 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 PARD6BQ9BYG5 372 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 OR2B2Q9GZK3 357 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 AKIP1Q9NQ31 210 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 METTL15A6NJ78 407 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 M0R1X1 148 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 DENRO43583 198 aaKnown RBP3.61□□□□□ -1.83
USH2A-202ENST00000366942 RAMP3O60896 148 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 ADAM11O75078 769 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 NGFP01138 241 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 SRIP30626 198 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 TIMP3P35625 211 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 CDKN1AP38936 164 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 SLC18A1P54219 525 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 ARF6P62330 175 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 ZXDBP98169 803 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 SPOCK1Q08629 439 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 FOXF1Q12946 379 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 FAM111BQ6SJ93 734 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 FAM131AQ6UXB0 335 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 Q71RC1 249 aaPredicted RBP3.61□□□□□ -1.83
USH2A-202ENST00000366942 ZNF767PQ75MW2 155 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 CXorf67Q86X51 503 aaPredicted RBP3.61□□□□□ -1.83
USH2A-202ENST00000366942 NTNG2Q96CW9 530 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 PDLIM5Q96HC4 596 aaKnown RBP3.61□□□□□ -1.83
USH2A-202ENST00000366942 OPALINQ96PE5 141 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 PEBP4Q96S96 227 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 SEC22CQ9BRL7 303 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 C11orf54Q9H0W9 315 aaPredicted RBP3.61□□□□□ -1.83
USH2A-202ENST00000366942 ST6GALNAC2Q9UJ37 374 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 WIPI2Q9Y4P8 454 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms