RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 SPDEFO95238 335 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 IGHG1P01857 330 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 P04436 131 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 P2RY1P47900 373 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 UBE2NP61088 152 aaKnown RBP4.74□□□□□ -1.65
SYNE1-220ENST00000471834 TMEM42Q69YG0 159 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 KDM8Q8N371 416 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 PRSS35Q8N3Z0 413 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 TCEAL3Q969E4 200 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 TIMD4Q96H15 378 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 YPEL2Q96QA6 119 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 C5orf66Q9H5L9 145 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 WDR76Q9H967 626 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 KLK13Q9UKR3 277 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 ADAM18Q9Y3Q7 739 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 A0A087WV48 116 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 ICOSLGO75144 302 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 CRTAPO75718 401 aaPredicted RBP4.74□□□□□ -1.65
SYNE1-220ENST00000471834 IGKV1D-16P01601 117 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 FABP1P07148 127 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 ADRB3P13945 408 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 SFTPDP35247 375 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 CLDN2P57739 230 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 CDK3Q00526 305 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 ACY1Q03154 408 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 PDZK1IP1Q13113 114 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 MELKQ14680 651 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 TP53I3Q53FA7 332 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 CSNK1A1LQ8N752 337 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 C10orf35Q96D05 121 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 NUDT9Q9BW91 350 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 PTGES2Q9H7Z7 377 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 KCNIP3Q9Y2W7 256 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 AK6Q9Y3D8 172 aaKnown RBP4.74□□□□□ -1.65
SYNE1-220ENST00000471834 TRAV27A0A087WT01 109 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 FGF17O60258 216 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 CDS2O95674 445 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 CTSDP07339 412 aaPredicted RBP4.73□□□□□ -1.65
SYNE1-220ENST00000471834 MMP9P14780 707 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 P2RY4P51582 365 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 RND3P61587 244 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 SRSF3P84103 164 aaKnown RBP4.73□□□□□ -1.65
SYNE1-220ENST00000471834 GAGE1Q13065 139 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 JOSD1Q15040 202 aaPredicted RBP4.73□□□□□ -1.65
SYNE1-220ENST00000471834 PLGLAQ15195 96 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF674Q2M3X9 581 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 PCGF3Q3KNV8 242 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 KRTAP27-1Q3LI81 207 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 GPR137CQ8N3F9 429 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 MBD3L1Q8WWY6 194 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 PTCHD1Q96NR3 888 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 NDUFAF3Q9BU61 184 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 DEFB126Q9BYW3 111 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 RHOFQ9HBH0 211 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 PLSCR2Q9NRY7 297 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 C1QTNF9BB2RNN3 333 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 H0YL77 283 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 LGALS8O00214 317 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 TUSC2O75896 110 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 THEGLP0DJG4 465 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 ID3Q02535 119 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 DEFB133Q30KQ1 61 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 CST9Q5W186 159 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 OLIG3Q7RTU3 272 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 SLC26A10Q8NG04 563 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 OR4D5Q8NGN0 318 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 S100PBPQ96BU1 408 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 C14orf144Q96I85 54 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 RAB33BQ9H082 229 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 MED20Q9H944 212 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 UBQLN4Q9NRR5 601 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 C5AR1P21730 350 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 ECI1P42126 302 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 SLC35A1P78382 337 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 RAB35Q15286 201 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 OR7A5Q15622 319 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 C2orf76Q3KRA6 126 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 AGBL4Q5VU57 503 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 C18orf63Q68DL7 685 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 LANCL3Q6ZV70 420 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 TMEM52Q8NDY8 209 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF524Q96C55 264 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 KIRREL1Q96J84 757 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 KCNK17Q96T54 332 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 SLC2A9Q9NRM0 540 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 MIOXQ9UGB7 285 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 POLR2AP24928 1970 aaKnown RBP4.73□□□□□ -1.65
SYNE1-220ENST00000471834 NUP214P35658 2090 aaPredicted RBP4.73□□□□□ -1.65
SYNE1-220ENST00000471834 TGFBR3LH3BV60 316 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 TOX3O15405 576 aaPredicted RBP4.73□□□□□ -1.65
SYNE1-220ENST00000471834 JTBO76095 146 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 RAB3DO95716 219 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 PFN1P07737 140 aaKnown RBP4.73□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF43P17038 809 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 AQP2P41181 271 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 NFATC4Q14934 902 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 PEA15Q15121 130 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 BATFQ16520 125 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 DEFB134Q4QY38 66 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 SLC18B1Q6NT16 456 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms