RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 BRD7Q9NPI1 651 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 TAS2R1Q9NYW7 299 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 MRPL15Q9P015 296 aaKnown RBP7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 ZNF319Q9P2F9 582 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 ZNF391Q9UJN7 358 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 PRPF19Q9UMS4 504 aaKnown RBP7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 KPTNQ9Y664 436 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 COMMD3-BMI1R4GMX3 469 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 BTBD17A6NE02 478 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 ARPC3O15145 178 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 AKR7A2O43488 359 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 NDUFA2O43678 99 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 CHST1O43916 411 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 GADD45GO95257 159 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 ECDO95905 644 aaPredicted RBP7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 PAHP00439 452 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 OPN1MWP04001 364 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 ANXA2P07355 339 aaKnown RBP7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 OPN1MW2P0DN77 364 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 OPN1MW3P0DN78 364 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 VSIG10L2P0DP72 767 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 OTX1P32242 354 aaPredicted RBP7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 FAM3AP98173 230 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 PPP1R8Q12972 351 aaKnown RBP7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 HERPUD1Q15011 391 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 TAF13Q15543 124 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 DGUOKQ16854 277 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 MICBQ29980 383 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 KLHL12Q53G59 568 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 PLA1AQ53H76 456 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 GLYATQ6IB77 296 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 HCP5Q6MZN7 132 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 Q6ZTK2 550 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 SLC16A9Q7RTY1 509 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 ZDHHC21Q8IVQ6 265 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 OR1M1Q8NGA1 313 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 OR9Q2Q8NGE9 314 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 OR8D4Q8NGM9 314 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 LRTOMTQ8WZ04 291 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 SGK3Q96BR1 496 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 SLAMF6Q96DU3 332 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 AJUBAQ96IF1 538 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 AMELYQ99218 206 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 DDOQ99489 341 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 NKX3-1Q99801 234 aaPredicted RBP7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 SSX3Q99909 188 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 DCTN5Q9BTE1 182 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 SLC22A4Q9H015 551 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 KAAG1Q9UBP8 84 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 RHBDD3Q9Y3P4 386 aa7.05□□□□□ -1.28
SHKBP1-220ENST00000599716 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 MEX3AA1L020 520 aaKnown RBP7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 ANKRD30BLA7E2S9 258 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 NDUFB3O43676 98 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 ANGPTL7O43827 346 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 NDUFB7P17568 137 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 EEF1B2P24534 225 aaKnown RBP7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 RRM2P31350 389 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 TGFBR2P37173 567 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 CX3CR1P49238 355 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 BMXP51813 675 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 EFNB2P52799 333 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 PSME3P61289 254 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 CRMP1Q14194 572 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 KRT72Q14CN4 511 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 KPRPQ5T749 579 aaPredicted RBP7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 STUMQ69YW2 141 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 DRAM2Q6UX65 266 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 FAM57BQ71RH2 274 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 ARPINQ7Z6K5 226 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 BATF2Q8N1L9 274 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 PLPP7Q8NBV4 271 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 SLC37A3Q8NCC5 494 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 RP9Q8TA86 221 aaKnown RBP7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 REEP6Q96HR9 211 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 GAFA1Q96PS6 74 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 OR5M11Q96RB7 305 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 PAPOLGQ9BWT3 736 aaKnown RBP7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 MMP28Q9H239 520 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 MED20Q9H944 212 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 TRIM36Q9NQ86 728 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 C14orf119Q9NWQ9 140 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 AURKAIP1Q9NWT8 199 aaPredicted RBP7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 FBLN5Q9UBX5 448 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 KCNG2Q9UJ96 466 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 DNAH7Q8WXX0 4024 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 CSMD3Q7Z407 3707 aa7.04□□□□□ -1.28
SHKBP1-220ENST00000599716 hCG_38984A0A1B0GV85 526 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 A0A1W2PQ09 198 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 DHRS12A0PJE2 317 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 ZNF593O00488 134 aaPredicted RBP7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 GPR37O15354 613 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 RHBDL1O75783 438 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 SOX14O95416 240 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 SEMG1P04279 462 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 CD28P10747 220 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 JUNBP17275 347 aaPredicted RBP7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 ACKR3P25106 362 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 POU1F1P28069 291 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 GSSP48637 474 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms