RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 MBD6Q96DN6 1003 aa25.2■■□□□ 1.62
LIMCH1-211ENST00000509638 RAB1BQ9H0U4 201 aa25.2■■□□□ 1.62
LIMCH1-211ENST00000509638 HHLA2Q9UM44 414 aa25.2■■□□□ 1.62
LIMCH1-211ENST00000509638 VPS13CQ709C8 3753 aa25.2■■□□□ 1.62
LIMCH1-211ENST00000509638 HSMCR30P0CW71 290 aa25.19■■□□□ 1.62
LIMCH1-211ENST00000509638 CELP19835 753 aa25.19■■□□□ 1.62
LIMCH1-211ENST00000509638 MAGEB1P43366 347 aa25.19■■□□□ 1.62
LIMCH1-211ENST00000509638 PTH2RP49190 550 aa25.19■■□□□ 1.62
LIMCH1-211ENST00000509638 RIPPLY1Q0D2K3 151 aa25.19■■□□□ 1.62
LIMCH1-211ENST00000509638 ZNF367Q7RTV3 350 aa25.19■■□□□ 1.62
LIMCH1-211ENST00000509638 RGP1Q92546 391 aaPredicted RBP25.19■■□□□ 1.62
LIMCH1-211ENST00000509638 TRMT61AQ96FX7 289 aaKnown RBP25.19■■□□□ 1.62
LIMCH1-211ENST00000509638 ZNF816-ZNF321PA0A0X1KG74 233 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 A0A1B0GWJ7 208 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 DHRS7CA6NNS2 312 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 H0YL77 283 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 LMX1BO60663 402 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 TSTQ16762 297 aaKnown RBP25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 PCGF3Q3KNV8 242 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 ITFG2Q969R8 447 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 PGLYRP3Q96LB9 341 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 DIRC2Q96SL1 478 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 GSX2Q9BZM3 304 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 ZNF696Q9H7X3 374 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 TEX15Q9BXT5 2789 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 NCR1O76036 304 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 ADH4P08319 380 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 PAX1P15863 534 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 ZNF12P17014 697 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 GNALP38405 381 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 ATP5J2P56134 94 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 CCL8P80075 99 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 OR8G1Q15617 311 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 ZBTB37Q5TC79 503 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 CCDC54Q8NEL0 328 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 OR13C3Q8NGS6 347 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 GHSRQ92847 366 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 SLC22A4Q9H015 551 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 PPP1R3EQ9H7J1 279 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 ENPP5Q9UJA9 477 aa25.18■■□□□ 1.62
LIMCH1-211ENST00000509638 A6NIN4 97 aa25.17■■□□□ 1.62
LIMCH1-211ENST00000509638 IGHV4-39P01824 125 aa25.17■■□□□ 1.62
LIMCH1-211ENST00000509638 PCMT1P22061 227 aa25.17■■□□□ 1.62
LIMCH1-211ENST00000509638 FAM209AQ5JX71 171 aa25.17■■□□□ 1.62
LIMCH1-211ENST00000509638 TSEN15Q8WW01 171 aaKnown RBP25.17■■□□□ 1.62
LIMCH1-211ENST00000509638 NR1H4Q96RI1 486 aaPredicted RBP25.17■■□□□ 1.62
LIMCH1-211ENST00000509638 ZNF281Q9Y2X9 895 aa25.17■■□□□ 1.62
LIMCH1-211ENST00000509638 NOP16Q9Y3C1 178 aaKnown RBP25.17■■□□□ 1.62
LIMCH1-211ENST00000509638 PLPP2O43688 288 aa25.16■■□□□ 1.62
LIMCH1-211ENST00000509638 LY6HO94772 140 aa25.16■■□□□ 1.62
LIMCH1-211ENST00000509638 CST4P01036 141 aa25.16■■□□□ 1.62
LIMCH1-211ENST00000509638 TNFSF4P23510 183 aa25.16■■□□□ 1.62
LIMCH1-211ENST00000509638 MLLT11Q13015 90 aaPredicted RBP25.16■■□□□ 1.62
LIMCH1-211ENST00000509638 TSPAN14Q8NG11 270 aa25.16■■□□□ 1.62
LIMCH1-211ENST00000509638 PIGCQ92535 297 aa25.16■■□□□ 1.62
LIMCH1-211ENST00000509638 OPALINQ96PE5 141 aa25.16■■□□□ 1.62
LIMCH1-211ENST00000509638 MGLLQ99685 303 aa25.16■■□□□ 1.62
LIMCH1-211ENST00000509638 NKIRAS2Q9NYR9 191 aa25.16■■□□□ 1.62
LIMCH1-211ENST00000509638 ZNF850A8MQ14 1090 aa25.15■■□□□ 1.62
LIMCH1-211ENST00000509638 F5H5P2 479 aa25.15■■□□□ 1.62
LIMCH1-211ENST00000509638 TPD52L2O43399 206 aaKnown RBP25.15■■□□□ 1.62
LIMCH1-211ENST00000509638 RPSAP08865 295 aaKnown RBP25.15■■□□□ 1.62
LIMCH1-211ENST00000509638 TNFAIP6P98066 277 aaPredicted RBP25.15■■□□□ 1.62
LIMCH1-211ENST00000509638 PRDX4Q13162 271 aa25.15■■□□□ 1.62
LIMCH1-211ENST00000509638 OR13C5Q8NGS8 318 aa25.15■■□□□ 1.62
LIMCH1-211ENST00000509638 UBASH3BQ8TF42 649 aa25.15■■□□□ 1.62
LIMCH1-211ENST00000509638 UFD1Q92890 307 aa25.15■■□□□ 1.62
LIMCH1-211ENST00000509638 SAP30LQ9HAJ7 183 aa25.15■■□□□ 1.62
LIMCH1-211ENST00000509638 AKAP9Q99996 3911 aa25.15■■□□□ 1.62
LIMCH1-211ENST00000509638 TANC2Q9HCD6 1990 aa25.15■■□□□ 1.62
LIMCH1-211ENST00000509638 GMDSO60547 372 aa25.14■■□□□ 1.62
LIMCH1-211ENST00000509638 CD55P08174 381 aa25.14■■□□□ 1.62
LIMCH1-211ENST00000509638 EFNA4P52798 201 aa25.14■■□□□ 1.62
LIMCH1-211ENST00000509638 LIPKQ5VXJ0 399 aa25.14■■□□□ 1.62
LIMCH1-211ENST00000509638 GPR148Q8TDV2 347 aa25.14■■□□□ 1.62
LIMCH1-211ENST00000509638 NEU4Q8WWR8 484 aaPredicted RBP25.14■■□□□ 1.62
LIMCH1-211ENST00000509638 FCGR1BQ92637 280 aa25.14■■□□□ 1.62
LIMCH1-211ENST00000509638 OR2V2Q96R30 315 aa25.14■■□□□ 1.62
LIMCH1-211ENST00000509638 ISYNA1Q9NPH2 558 aa25.14■■□□□ 1.62
LIMCH1-211ENST00000509638 DECR2Q9NUI1 292 aa25.14■■□□□ 1.62
LIMCH1-211ENST00000509638 DHDHQ9UQ10 334 aa25.14■■□□□ 1.62
LIMCH1-211ENST00000509638 HPXP02790 462 aa25.14■■□□□ 1.61
LIMCH1-211ENST00000509638 UBE2UQ5VVX9 321 aa25.14■■□□□ 1.61
LIMCH1-211ENST00000509638 ZDHHC23Q8IYP9 409 aa25.14■■□□□ 1.61
LIMCH1-211ENST00000509638 OR8S1Q8NH09 359 aa25.14■■□□□ 1.61
LIMCH1-211ENST00000509638 ADAT3Q96EY9 351 aaPredicted RBP25.14■■□□□ 1.61
LIMCH1-211ENST00000509638 ZNF275Q9NSD4 429 aaPredicted RBP25.14■■□□□ 1.61
LIMCH1-211ENST00000509638 MPC1Q9Y5U8 109 aa25.14■■□□□ 1.61
LIMCH1-211ENST00000509638 MYO9AB2RTY4 2548 aa25.13■■□□□ 1.61
LIMCH1-211ENST00000509638 ANXA2P2A6NMY6 339 aa25.13■■□□□ 1.61
LIMCH1-211ENST00000509638 ZNF20P17024 532 aa25.13■■□□□ 1.61
LIMCH1-211ENST00000509638 SPRNQ5BIV9 151 aa25.13■■□□□ 1.61
LIMCH1-211ENST00000509638 YIF1BQ5BJH7 314 aa25.13■■□□□ 1.61
LIMCH1-211ENST00000509638 KRT74Q7RTS7 529 aa25.13■■□□□ 1.61
LIMCH1-211ENST00000509638 ITPKCQ96DU7 683 aa25.13■■□□□ 1.61
LIMCH1-211ENST00000509638 EGLN1Q9GZT9 426 aa25.13■■□□□ 1.61
LIMCH1-211ENST00000509638 BARX1Q9HBU1 254 aaPredicted RBP25.13■■□□□ 1.61
LIMCH1-211ENST00000509638 A0A087WXM4 84 aa25.12■■□□□ 1.61
LIMCH1-211ENST00000509638 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP25.12■■□□□ 1.61
LIMCH1-211ENST00000509638 F12P00748 615 aaPredicted RBP25.12■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms