RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 USP48Q86UV5 1035 aa24.14■■□□□ 1.45
CCDC28A-203ENST00000617445 CAPNS2Q96L46 248 aa24.14■■□□□ 1.45
CCDC28A-203ENST00000617445 PTPRCP08575 1304 aa24.13■■□□□ 1.45
CCDC28A-203ENST00000617445 EGFRP00533 1210 aa24.13■■□□□ 1.45
CCDC28A-203ENST00000617445 USP17L8P0C7I0 530 aa24.13■■□□□ 1.45
CCDC28A-203ENST00000617445 KCNJ4P48050 445 aa24.13■■□□□ 1.45
CCDC28A-203ENST00000617445 CHRNDQ07001 517 aa24.13■■□□□ 1.45
CCDC28A-203ENST00000617445 CCDC57Q2TAC2 916 aa24.13■■□□□ 1.45
CCDC28A-203ENST00000617445 STRIP1Q5VSL9 837 aa24.13■■□□□ 1.45
CCDC28A-203ENST00000617445 CHMP3Q9Y3E7 222 aa24.13■■□□□ 1.45
CCDC28A-203ENST00000617445 MYO3BQ8WXR4 1341 aa24.12■■□□□ 1.45
CCDC28A-203ENST00000617445 WTIPA6NIX2 430 aaPredicted RBP24.12■■□□□ 1.45
CCDC28A-203ENST00000617445 LMBR1LQ6UX01 489 aa24.12■■□□□ 1.45
CCDC28A-203ENST00000617445 PAXIP1Q6ZW49 1069 aaPredicted RBP24.12■■□□□ 1.45
CCDC28A-203ENST00000617445 MRPL50Q8N5N7 158 aaKnown RBP24.12■■□□□ 1.45
CCDC28A-203ENST00000617445 MAP2K2P36507 400 aa24.11■■□□□ 1.45
CCDC28A-203ENST00000617445 CTCFP49711 727 aaPredicted RBP24.11■■□□□ 1.45
CCDC28A-203ENST00000617445 FOXN1O15353 648 aa24.1■■□□□ 1.45
CCDC28A-203ENST00000617445 C15orf52Q6ZUT6 534 aaKnown RBP24.1■■□□□ 1.45
CCDC28A-203ENST00000617445 SULF1Q8IWU6 871 aa24.1■■□□□ 1.45
CCDC28A-203ENST00000617445 OGFOD1Q8N543 542 aa24.1■■□□□ 1.45
CCDC28A-203ENST00000617445 ZNF408Q9H9D4 720 aa24.1■■□□□ 1.45
CCDC28A-203ENST00000617445 MYOZ2Q9NPC6 264 aa24.1■■□□□ 1.45
CCDC28A-203ENST00000617445 PRDM10Q9NQV6 1147 aa24.1■■□□□ 1.45
CCDC28A-203ENST00000617445 ALDH1L2Q3SY69 923 aa24.09■■□□□ 1.45
CCDC28A-203ENST00000617445 TAF7LQ5H9L4 462 aa24.09■■□□□ 1.45
CCDC28A-203ENST00000617445 DACT2Q5SW24 774 aa24.09■■□□□ 1.45
CCDC28A-203ENST00000617445 CYP4F22Q6NT55 531 aa24.09■■□□□ 1.45
CCDC28A-203ENST00000617445 TXNRD3Q86VQ6 643 aa24.09■■□□□ 1.45
CCDC28A-203ENST00000617445 UTYO14607 1347 aa24.09■■□□□ 1.45
CCDC28A-203ENST00000617445 SCARF1Q14162 830 aa24.08■■□□□ 1.45
CCDC28A-203ENST00000617445 EPHA10Q5JZY3 1008 aa24.08■■□□□ 1.45
CCDC28A-203ENST00000617445 LDHAL6AQ6ZMR3 332 aa24.08■■□□□ 1.45
CCDC28A-203ENST00000617445 TNS4Q8IZW8 715 aa24.08■■□□□ 1.45
CCDC28A-203ENST00000617445 GGA3Q9NZ52 723 aa24.08■■□□□ 1.45
CCDC28A-203ENST00000617445 PITPNM2Q9BZ72 1349 aa24.08■■□□□ 1.44
CCDC28A-203ENST00000617445 CT47B1P0C2W7 299 aaPredicted RBP24.07■■□□□ 1.44
CCDC28A-203ENST00000617445 TTLL5Q6EMB2 1281 aa24.07■■□□□ 1.44
CCDC28A-203ENST00000617445 TRMT2AQ8IZ69 625 aaKnown RBP24.07■■□□□ 1.44
CCDC28A-203ENST00000617445 SSH1Q8WYL5 1049 aa24.07■■□□□ 1.44
CCDC28A-203ENST00000617445 BEGAINQ9BUH8 593 aa24.07■■□□□ 1.44
CCDC28A-203ENST00000617445 THSD7BQ9C0I4 1608 aa24.06■■□□□ 1.44
CCDC28A-203ENST00000617445 C2orf69Q8N8R5 385 aa24.06■■□□□ 1.44
CCDC28A-203ENST00000617445 CNNM1Q9NRU3 951 aa24.06■■□□□ 1.44
CCDC28A-203ENST00000617445 FBXW7Q969H0 707 aa24.05■■□□□ 1.44
CCDC28A-203ENST00000617445 GBA2Q9HCG7 927 aaPredicted RBP24.05■■□□□ 1.44
CCDC28A-203ENST00000617445 CD209Q9NNX6 404 aa24.05■■□□□ 1.44
CCDC28A-203ENST00000617445 ADM5C9JUS6 153 aa24.04■■□□□ 1.44
CCDC28A-203ENST00000617445 TAF5LO75529 589 aa24.04■■□□□ 1.44
CCDC28A-203ENST00000617445 NBPF7P0C2Y1 421 aaPredicted RBP24.04■■□□□ 1.44
CCDC28A-203ENST00000617445 KLRK1P26718 216 aa24.04■■□□□ 1.44
CCDC28A-203ENST00000617445 HUNKP57058 714 aa24.04■■□□□ 1.44
CCDC28A-203ENST00000617445 GRM1Q13255 1194 aa24.04■■□□□ 1.44
CCDC28A-203ENST00000617445 ANGEL2Q5VTE6 544 aaKnown RBP24.04■■□□□ 1.44
CCDC28A-203ENST00000617445 ZNF804AQ7Z570 1209 aa24.03■■□□□ 1.44
CCDC28A-203ENST00000617445 HELBQ8NG08 1087 aaPredicted RBP24.03■■□□□ 1.44
CCDC28A-203ENST00000617445 CDCA7LQ96GN5 454 aa24.03■■□□□ 1.44
CCDC28A-203ENST00000617445 SUCLG2Q96I99 432 aa24.03■■□□□ 1.44
CCDC28A-203ENST00000617445 HDAC9Q9UKV0 1011 aa24.03■■□□□ 1.44
CCDC28A-203ENST00000617445 IRS2Q9Y4H2 1338 aa24.03■■□□□ 1.44
CCDC28A-203ENST00000617445 ZNF646O15015 1829 aaPredicted RBP24.03■■□□□ 1.44
CCDC28A-203ENST00000617445 A0A1B0GUL6 1792 aa24.02■■□□□ 1.44
CCDC28A-203ENST00000617445 GTF2IP78347 998 aa24.02■■□□□ 1.44
CCDC28A-203ENST00000617445 KAZALD1Q96I82 304 aa24.02■■□□□ 1.44
CCDC28A-203ENST00000617445 ZNF594Q96JF6 807 aaPredicted RBP24.02■■□□□ 1.44
CCDC28A-203ENST00000617445 IL1R1P14778 569 aa24.01■■□□□ 1.43
CCDC28A-203ENST00000617445 NOGQ13253 232 aa24.01■■□□□ 1.43
CCDC28A-203ENST00000617445 RABL6Q3YEC7 729 aaPredicted RBP24.01■■□□□ 1.43
CCDC28A-203ENST00000617445 ASTN2O75129 1339 aaPredicted RBP24.01■■□□□ 1.43
CCDC28A-203ENST00000617445 CA12O43570 354 aa24■■□□□ 1.43
CCDC28A-203ENST00000617445 BRPF1P55201 1214 aaPredicted RBP24■■□□□ 1.43
CCDC28A-203ENST00000617445 FKBP1BP68106 108 aa24■■□□□ 1.43
CCDC28A-203ENST00000617445 UBE4AQ14139 1066 aa24■■□□□ 1.43
CCDC28A-203ENST00000617445 DLK2Q6UY11 383 aa24■■□□□ 1.43
CCDC28A-203ENST00000617445 CCDC102AQ96A19 550 aa24■■□□□ 1.43
CCDC28A-203ENST00000617445 CDCA5Q96FF9 252 aa24■■□□□ 1.43
CCDC28A-203ENST00000617445 MXD3Q9BW11 206 aa24■■□□□ 1.43
CCDC28A-203ENST00000617445 SMC4Q9NTJ3 1288 aa24■■□□□ 1.43
CCDC28A-203ENST00000617445 SNAP23O00161 211 aa23.99■■□□□ 1.43
CCDC28A-203ENST00000617445 AOC2O75106 756 aa23.99■■□□□ 1.43
CCDC28A-203ENST00000617445 LBX1P52954 281 aa23.99■■□□□ 1.43
CCDC28A-203ENST00000617445 FKBP1AP62942 108 aaKnown RBP23.99■■□□□ 1.43
CCDC28A-203ENST00000617445 RGMBQ6NW40 437 aa23.99■■□□□ 1.43
CCDC28A-203ENST00000617445 BICC1Q9H694 974 aaKnown RBP23.99■■□□□ 1.43
CCDC28A-203ENST00000617445 MROH5Q6ZUA9 1318 aa23.99■■□□□ 1.43
CCDC28A-203ENST00000617445 WNT10BO00744 389 aa23.98■■□□□ 1.43
CCDC28A-203ENST00000617445 PLIN1O60240 522 aa23.98■■□□□ 1.43
CCDC28A-203ENST00000617445 HSPA8P11142 646 aaKnown RBP23.98■■□□□ 1.43
CCDC28A-203ENST00000617445 NBPF9Q3BBW0 867 aa23.98■■□□□ 1.43
CCDC28A-203ENST00000617445 USP44Q9H0E7 712 aa23.98■■□□□ 1.43
CCDC28A-203ENST00000617445 KIAA0825Q8IV33 1275 aa23.97■■□□□ 1.43
CCDC28A-203ENST00000617445 RIPOR2Q9Y4F9 1068 aa23.97■■□□□ 1.43
CCDC28A-203ENST00000617445 SASH1O94885 1247 aa23.95■■□□□ 1.42
CCDC28A-203ENST00000617445 ANKRD44Q8N8A2 993 aa23.95■■□□□ 1.42
CCDC28A-203ENST00000617445 MTMR14Q8NCE2 650 aa23.95■■□□□ 1.42
CCDC28A-203ENST00000617445 ZNF157P51786 506 aaPredicted RBP23.94■■□□□ 1.42
CCDC28A-203ENST00000617445 APOBEC3FQ8IUX4 373 aaKnown RBP23.94■■□□□ 1.42
CCDC28A-203ENST00000617445 ZBED3Q96IU2 234 aaPredicted RBP23.94■■□□□ 1.42
CCDC28A-203ENST00000617445 PUS3Q9BZE2 481 aaKnown RBP23.94■■□□□ 1.42
CCDC28A-203ENST00000617445 HDAC5Q9UQL6 1122 aa23.94■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms