RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 ZAP70P43403 619 aa10.36□□□□□ -0.75
PDLIM5-222ENST00000615540 OTUD7BQ6GQQ9 843 aa10.36□□□□□ -0.75
PDLIM5-222ENST00000615540 HELLSQ9NRZ9 838 aa10.36□□□□□ -0.75
PDLIM5-222ENST00000615540 DDX19AQ9NUU7 478 aaKnown RBP10.36□□□□□ -0.75
PDLIM5-222ENST00000615540 JAK2O60674 1132 aa10.36□□□□□ -0.75
PDLIM5-222ENST00000615540 FAM98CQ17RN3 349 aaKnown RBP10.36□□□□□ -0.75
PDLIM5-222ENST00000615540 ZNF444Q8N0Y2 327 aaPredicted RBP10.36□□□□□ -0.75
PDLIM5-222ENST00000615540 CAGE1Q8TC20 777 aa10.36□□□□□ -0.75
PDLIM5-222ENST00000615540 TANGO6Q9C0B7 1094 aa10.36□□□□□ -0.75
PDLIM5-222ENST00000615540 ITSN1Q15811 1721 aa10.36□□□□□ -0.75
PDLIM5-222ENST00000615540 TSPY2A6NKD2 308 aa10.36□□□□□ -0.75
PDLIM5-222ENST00000615540 SMTNL1A8MU46 457 aa10.36□□□□□ -0.75
PDLIM5-222ENST00000615540 ZBTB43O43298 467 aa10.36□□□□□ -0.75
PDLIM5-222ENST00000615540 ME3Q16798 604 aa10.36□□□□□ -0.75
PDLIM5-222ENST00000615540 PPFIBP1Q86W92 1011 aa10.36□□□□□ -0.75
PDLIM5-222ENST00000615540 CTCFLQ8NI51 663 aaPredicted RBP10.36□□□□□ -0.75
PDLIM5-222ENST00000615540 MROH1Q8NDA8 1641 aa10.36□□□□□ -0.75
PDLIM5-222ENST00000615540 IQCA1Q86XH1 822 aa10.36□□□□□ -0.75
PDLIM5-222ENST00000615540 MYL10Q9BUA6 226 aa10.36□□□□□ -0.75
PDLIM5-222ENST00000615540 PNPLA6Q8IY17 1366 aa10.35□□□□□ -0.75
PDLIM5-222ENST00000615540 CPSF1Q10570 1443 aaKnown RBP10.35□□□□□ -0.75
PDLIM5-222ENST00000615540 CBFA2T2O43439 604 aa10.35□□□□□ -0.75
PDLIM5-222ENST00000615540 PICALMQ13492 652 aa10.35□□□□□ -0.75
PDLIM5-222ENST00000615540 TMC6Q7Z403 805 aa10.35□□□□□ -0.75
PDLIM5-222ENST00000615540 RNF41Q9H4P4 317 aaPredicted RBP10.35□□□□□ -0.75
PDLIM5-222ENST00000615540 B4E1Z4 1266 aa10.35□□□□□ -0.75
PDLIM5-222ENST00000615540 C16orf45Q96MC5 204 aaPredicted RBP10.35□□□□□ -0.75
PDLIM5-222ENST00000615540 PUS3Q9BZE2 481 aaKnown RBP10.35□□□□□ -0.75
PDLIM5-222ENST00000615540 LMBRD1Q9NUN5 540 aa10.35□□□□□ -0.75
PDLIM5-222ENST00000615540 SEC63Q9UGP8 760 aaKnown RBP10.35□□□□□ -0.75
PDLIM5-222ENST00000615540 NRKQ7Z2Y5 1582 aa10.35□□□□□ -0.75
PDLIM5-222ENST00000615540 VWDEQ8N2E2 1590 aa10.35□□□□□ -0.75
PDLIM5-222ENST00000615540 CCDC191Q8NCU4 936 aa10.35□□□□□ -0.75
PDLIM5-222ENST00000615540 MED14O60244 1454 aa10.35□□□□□ -0.75
PDLIM5-222ENST00000615540 IFIT1BQ5T764 474 aaKnown RBP10.35□□□□□ -0.75
PDLIM5-222ENST00000615540 DHX32Q7L7V1 743 aaKnown RBP10.35□□□□□ -0.75
PDLIM5-222ENST00000615540 CPLX3Q8WVH0 158 aa10.35□□□□□ -0.75
PDLIM5-222ENST00000615540 ZFYP08048 801 aaPredicted RBP10.35□□□□□ -0.75
PDLIM5-222ENST00000615540 INTS4Q96HW7 963 aaKnown RBP10.35□□□□□ -0.75
PDLIM5-222ENST00000615540 ZSCAN16Q9H4T2 348 aaPredicted RBP10.35□□□□□ -0.75
PDLIM5-222ENST00000615540 TMEM131LA2VDJ0 1609 aa10.34□□□□□ -0.75
PDLIM5-222ENST00000615540 GNPATO15228 680 aa10.34□□□□□ -0.75
PDLIM5-222ENST00000615540 ADCK5Q3MIX3 580 aa10.34□□□□□ -0.75
PDLIM5-222ENST00000615540 KAT14Q9H8E8 782 aa10.34□□□□□ -0.75
PDLIM5-222ENST00000615540 SMARCE1Q969G3 411 aa10.34□□□□□ -0.75
PDLIM5-222ENST00000615540 LSG1Q9H089 658 aaKnown RBP10.34□□□□□ -0.75
PDLIM5-222ENST00000615540 CCDC96Q2M329 555 aa10.34□□□□□ -0.75
PDLIM5-222ENST00000615540 NAA16Q6N069 864 aaPredicted RBP10.34□□□□□ -0.75
PDLIM5-222ENST00000615540 CCDC112Q8NEF3 446 aa10.34□□□□□ -0.75
PDLIM5-222ENST00000615540 DIP2AQ14689 1571 aa10.34□□□□□ -0.75
PDLIM5-222ENST00000615540 RTN1Q16799 776 aa10.34□□□□□ -0.75
PDLIM5-222ENST00000615540 SAP30BPQ9UHR5 308 aaKnown RBP10.34□□□□□ -0.75
PDLIM5-222ENST00000615540 ASAP1Q9ULH1 1129 aa10.34□□□□□ -0.75
PDLIM5-222ENST00000615540 AFMP43652 599 aa10.34□□□□□ -0.75
PDLIM5-222ENST00000615540 ZNF165P49910 485 aa10.34□□□□□ -0.75
PDLIM5-222ENST00000615540 AOPEPQ8N6M6 819 aa10.34□□□□□ -0.75
PDLIM5-222ENST00000615540 RIMBP2O15034 1052 aa10.33□□□□□ -0.76
PDLIM5-222ENST00000615540 ADORA1P30542 326 aa10.33□□□□□ -0.76
PDLIM5-222ENST00000615540 LUZP1Q86V48 1076 aa10.33□□□□□ -0.76
PDLIM5-222ENST00000615540 CRACR2BQ8N4Y2 399 aaPredicted RBP10.33□□□□□ -0.76
PDLIM5-222ENST00000615540 ZNF622Q969S3 477 aaKnown RBP eCLIP10.33□□□□□ -0.76
PDLIM5-222ENST00000615540 KRT23Q9C075 422 aa10.33□□□□□ -0.76
PDLIM5-222ENST00000615540 RRAGDQ9NQL2 400 aaPredicted RBP10.33□□□□□ -0.76
PDLIM5-222ENST00000615540 ZNF589Q86UQ0 364 aaPredicted RBP10.33□□□□□ -0.76
PDLIM5-222ENST00000615540 TPCN1Q9ULQ1 816 aa10.33□□□□□ -0.76
PDLIM5-222ENST00000615540 CCDC196A0A1B0GTZ2 297 aa10.33□□□□□ -0.76
PDLIM5-222ENST00000615540 ECM2O94769 699 aaPredicted RBP10.33□□□□□ -0.76
PDLIM5-222ENST00000615540 ST5P78524 1137 aa10.33□□□□□ -0.76
PDLIM5-222ENST00000615540 GPT2Q8TD30 523 aa10.33□□□□□ -0.76
PDLIM5-222ENST00000615540 CRNKL1Q9BZJ0 848 aaKnown RBP10.33□□□□□ -0.76
PDLIM5-222ENST00000615540 TFCP2L1Q9NZI6 479 aa10.33□□□□□ -0.76
PDLIM5-222ENST00000615540 DLC1Q96QB1 1528 aa10.33□□□□□ -0.76
PDLIM5-222ENST00000615540 SLFNL1Q499Z3 407 aa10.33□□□□□ -0.76
PDLIM5-222ENST00000615540 PTPRUQ92729 1446 aa10.33□□□□□ -0.76
PDLIM5-222ENST00000615540 M0R2C6 588 aa10.32□□□□□ -0.76
PDLIM5-222ENST00000615540 GPAA1O43292 621 aa10.32□□□□□ -0.76
PDLIM5-222ENST00000615540 TYRO3Q06418 890 aa10.32□□□□□ -0.76
PDLIM5-222ENST00000615540 RASEFQ8IZ41 740 aa10.32□□□□□ -0.76
PDLIM5-222ENST00000615540 TTC12Q9H892 705 aaPredicted RBP10.32□□□□□ -0.76
PDLIM5-222ENST00000615540 ANKARQ7Z5J8 1434 aa10.32□□□□□ -0.76
PDLIM5-222ENST00000615540 PDIA4P13667 645 aaKnown RBP10.32□□□□□ -0.76
PDLIM5-222ENST00000615540 DIP2BQ9P265 1576 aa10.32□□□□□ -0.76
PDLIM5-222ENST00000615540 TSPY3P0CV98 308 aa10.32□□□□□ -0.76
PDLIM5-222ENST00000615540 TSPY8P0CW00 308 aa10.32□□□□□ -0.76
PDLIM5-222ENST00000615540 PDE8AO60658 829 aa10.32□□□□□ -0.76
PDLIM5-222ENST00000615540 ERBB3P21860 1342 aa10.32□□□□□ -0.76
PDLIM5-222ENST00000615540 SMIM5Q71RC9 77 aa10.32□□□□□ -0.76
PDLIM5-222ENST00000615540 A0A1B0GVL5 298 aa10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 ERVV-2B6SEH9 535 aa10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 SYKP43405 635 aa10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 PUM3Q15397 648 aaKnown RBP10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 SPECC1Q5M775 1068 aa10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 ZNF532Q9HCE3 1301 aa10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 E7EWF7 191 aa10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 CTAGE5O15320 804 aa10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 CTSWP56202 376 aa10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 PDE4BQ07343 736 aa10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 SKIDA1Q1XH10 827 aa10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 CCDC70Q6NSX1 233 aa10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 HEATR3Q7Z4Q2 680 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms