RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 SULF1Q8IWU6 871 aa23.83■■□□□ 1.41
PNKP-213ENST00000599543 MPHOSPH8Q99549 860 aa23.83■■□□□ 1.41
PNKP-213ENST00000599543 ZNF646O15015 1829 aaPredicted RBP23.82■■□□□ 1.4
PNKP-213ENST00000599543 WTIPA6NIX2 430 aaPredicted RBP23.82■■□□□ 1.4
PNKP-213ENST00000599543 ZNF280AP59817 542 aaPredicted RBP23.82■■□□□ 1.4
PNKP-213ENST00000599543 DLK2Q6UY11 383 aa23.82■■□□□ 1.4
PNKP-213ENST00000599543 LEMD3Q9Y2U8 911 aa23.82■■□□□ 1.4
PNKP-213ENST00000599543 F6X3S4 739 aa23.81■■□□□ 1.4
PNKP-213ENST00000599543 CSF1RP07333 972 aa23.81■■□□□ 1.4
PNKP-213ENST00000599543 USP17L8P0C7I0 530 aa23.81■■□□□ 1.4
PNKP-213ENST00000599543 HUNKP57058 714 aa23.81■■□□□ 1.4
PNKP-213ENST00000599543 ANKRD2Q9GZV1 360 aa23.81■■□□□ 1.4
PNKP-213ENST00000599543 COA1Q9GZY4 146 aa23.8■■□□□ 1.4
PNKP-213ENST00000599543 GBA2Q9HCG7 927 aaPredicted RBP23.8■■□□□ 1.4
PNKP-213ENST00000599543 MYOZ2Q9NPC6 264 aa23.8■■□□□ 1.4
PNKP-213ENST00000599543 A0A1B0GUL6 1792 aa23.8■■□□□ 1.4
PNKP-213ENST00000599543 ANKRD18BA2A2Z9 1011 aa23.79■■□□□ 1.4
PNKP-213ENST00000599543 BEND3Q5T5X7 828 aa23.79■■□□□ 1.4
PNKP-213ENST00000599543 C2orf69Q8N8R5 385 aa23.79■■□□□ 1.4
PNKP-213ENST00000599543 FBXW7Q969H0 707 aa23.79■■□□□ 1.4
PNKP-213ENST00000599543 GMLQ99445 158 aa23.79■■□□□ 1.4
PNKP-213ENST00000599543 ZNF804BA4D1E1 1349 aa23.79■■□□□ 1.4
PNKP-213ENST00000599543 ASTN2O75129 1339 aaPredicted RBP23.79■■□□□ 1.4
PNKP-213ENST00000599543 KCNJ4P48050 445 aa23.78■■□□□ 1.4
PNKP-213ENST00000599543 SCARF1Q14162 830 aa23.78■■□□□ 1.4
PNKP-213ENST00000599543 ANGEL2Q5VTE6 544 aaKnown RBP23.78■■□□□ 1.4
PNKP-213ENST00000599543 CHMP3Q9Y3E7 222 aa23.78■■□□□ 1.4
PNKP-213ENST00000599543 BRPF1P55201 1214 aaPredicted RBP23.77■■□□□ 1.4
PNKP-213ENST00000599543 NOGQ13253 232 aa23.77■■□□□ 1.4
PNKP-213ENST00000599543 MYO3BQ8WXR4 1341 aa23.77■■□□□ 1.4
PNKP-213ENST00000599543 CA12O43570 354 aa23.76■■□□□ 1.39
PNKP-213ENST00000599543 CHRNDQ07001 517 aa23.76■■□□□ 1.39
PNKP-213ENST00000599543 IFIT5Q13325 482 aaKnown RBP23.76■■□□□ 1.39
PNKP-213ENST00000599543 DACT2Q5SW24 774 aa23.76■■□□□ 1.39
PNKP-213ENST00000599543 STRIP1Q5VSL9 837 aa23.76■■□□□ 1.39
PNKP-213ENST00000599543 TXNRD3Q86VQ6 643 aa23.76■■□□□ 1.39
PNKP-213ENST00000599543 OGFOD1Q8N543 542 aa23.76■■□□□ 1.39
PNKP-213ENST00000599543 RGMBQ6NW40 437 aa23.75■■□□□ 1.39
PNKP-213ENST00000599543 CDCA5Q96FF9 252 aa23.75■■□□□ 1.39
PNKP-213ENST00000599543 PITPNM2Q9BZ72 1349 aa23.75■■□□□ 1.39
PNKP-213ENST00000599543 GRM8O00222 908 aa23.74■■□□□ 1.39
PNKP-213ENST00000599543 KLRK1P26718 216 aa23.74■■□□□ 1.39
PNKP-213ENST00000599543 FOXO4P98177 505 aa23.74■■□□□ 1.39
PNKP-213ENST00000599543 MXD3Q9BW11 206 aa23.74■■□□□ 1.39
PNKP-213ENST00000599543 TSKSQ9UJT2 592 aa23.74■■□□□ 1.39
PNKP-213ENST00000599543 SLC4A10Q6U841 1118 aa23.73■■□□□ 1.39
PNKP-213ENST00000599543 C9orf78Q9NZ63 289 aaPredicted RBP23.73■■□□□ 1.39
PNKP-213ENST00000599543 ZNF157P51786 506 aaPredicted RBP23.72■■□□□ 1.39
PNKP-213ENST00000599543 TTLL5Q6EMB2 1281 aa23.72■■□□□ 1.39
PNKP-213ENST00000599543 ZNF521Q96K83 1311 aa23.72■■□□□ 1.39
PNKP-213ENST00000599543 PAPPA2Q9BXP8 1791 aa23.72■■□□□ 1.39
PNKP-213ENST00000599543 ALDH1L1O75891 902 aa23.71■■□□□ 1.39
PNKP-213ENST00000599543 CCDC57Q2TAC2 916 aa23.71■■□□□ 1.39
PNKP-213ENST00000599543 TAF7LQ5H9L4 462 aa23.71■■□□□ 1.39
PNKP-213ENST00000599543 LMBR1LQ6UX01 489 aa23.71■■□□□ 1.39
PNKP-213ENST00000599543 CCDC102AQ96A19 550 aa23.71■■□□□ 1.39
PNKP-213ENST00000599543 SRCIN1Q9C0H9 1055 aa23.71■■□□□ 1.39
PNKP-213ENST00000599543 CASP8AP2Q9UKL3 1982 aa23.71■■□□□ 1.39
PNKP-213ENST00000599543 AKAP11Q9UKA4 1901 aa23.71■■□□□ 1.39
PNKP-213ENST00000599543 TAF5LO75529 589 aa23.7■■□□□ 1.38
PNKP-213ENST00000599543 NBPF9Q3BBW0 867 aa23.7■■□□□ 1.38
PNKP-213ENST00000599543 FAM155AB1AL88 458 aaPredicted RBP23.69■■□□□ 1.38
PNKP-213ENST00000599543 MMP14P50281 582 aa23.69■■□□□ 1.38
PNKP-213ENST00000599543 GTF2IP78347 998 aa23.69■■□□□ 1.38
PNKP-213ENST00000599543 HELBQ8NG08 1087 aaPredicted RBP23.69■■□□□ 1.38
PNKP-213ENST00000599543 ZIC5Q96T25 663 aa23.69■■□□□ 1.38
PNKP-213ENST00000599543 FKBP1BP68106 108 aa23.68■■□□□ 1.38
PNKP-213ENST00000599543 EPHA10Q5JZY3 1008 aa23.68■■□□□ 1.38
PNKP-213ENST00000599543 KIAA0825Q8IV33 1275 aa23.68■■□□□ 1.38
PNKP-213ENST00000599543 CD209Q9NNX6 404 aa23.68■■□□□ 1.38
PNKP-213ENST00000599543 HDAC9Q9UKV0 1011 aa23.68■■□□□ 1.38
PNKP-213ENST00000599543 SCAF8Q9UPN6 1271 aaKnown RBP23.68■■□□□ 1.38
PNKP-213ENST00000599543 SNAP23O00161 211 aa23.67■■□□□ 1.38
PNKP-213ENST00000599543 WNT10BO00744 389 aa23.67■■□□□ 1.38
PNKP-213ENST00000599543 LDHAL6AQ6ZMR3 332 aa23.67■■□□□ 1.38
PNKP-213ENST00000599543 ZNF804AQ7Z570 1209 aa23.67■■□□□ 1.38
PNKP-213ENST00000599543 CNNM1Q9NRU3 951 aa23.67■■□□□ 1.38
PNKP-213ENST00000599543 ECM29Q5VYK3 1845 aa23.66■■□□□ 1.38
PNKP-213ENST00000599543 IRS2Q9Y4H2 1338 aa23.66■■□□□ 1.38
PNKP-213ENST00000599543 SLC10A3P09131 477 aa23.66■■□□□ 1.38
PNKP-213ENST00000599543 C15orf52Q6ZUT6 534 aaKnown RBP23.66■■□□□ 1.38
PNKP-213ENST00000599543 ZNF594Q96JF6 807 aaPredicted RBP23.66■■□□□ 1.38
PNKP-213ENST00000599543 E9PSI1 815 aa23.65■■□□□ 1.38
PNKP-213ENST00000599543 SASH1O94885 1247 aa23.65■■□□□ 1.38
PNKP-213ENST00000599543 ABHD8Q96I13 439 aa23.65■■□□□ 1.38
PNKP-213ENST00000599543 PLIN1O60240 522 aa23.64■■□□□ 1.37
PNKP-213ENST00000599543 KIF23Q02241 960 aaPredicted RBP23.64■■□□□ 1.37
PNKP-213ENST00000599543 NF2P35240 595 aa23.63■■□□□ 1.37
PNKP-213ENST00000599543 PRAMEF18Q5VWM3 479 aa23.63■■□□□ 1.37
PNKP-213ENST00000599543 SUCLG2Q96I99 432 aa23.63■■□□□ 1.37
PNKP-213ENST00000599543 PTPRCP08575 1304 aa23.62■■□□□ 1.37
PNKP-213ENST00000599543 TTLL12Q14166 644 aaPredicted RBP23.62■■□□□ 1.37
PNKP-213ENST00000599543 RASAL3Q86YV0 1011 aa23.62■■□□□ 1.37
PNKP-213ENST00000599543 APOBEC3FQ8IUX4 373 aaKnown RBP23.62■■□□□ 1.37
PNKP-213ENST00000599543 MRPL50Q8N5N7 158 aaKnown RBP23.62■■□□□ 1.37
PNKP-213ENST00000599543 SAGE1Q9NXZ1 904 aa23.62■■□□□ 1.37
PNKP-213ENST00000599543 NBPF7P0C2Y1 421 aaPredicted RBP23.61■■□□□ 1.37
PNKP-213ENST00000599543 IL1R1P14778 569 aa23.61■■□□□ 1.37
PNKP-213ENST00000599543 UTYO14607 1347 aa23.6■■□□□ 1.37
PNKP-213ENST00000599543 MOB2Q70IA6 237 aa23.6■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms