RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 AMPD3Q01432 767 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 SP4Q02446 784 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 KCTD2Q14681 263 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 KMT5BQ4FZB7 885 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 NSMFQ6X4W1 530 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 CDC37L1Q7L3B6 337 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 RSPH3Q86UC2 560 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 PDILTQ8N807 584 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 HELBQ8NG08 1087 aaPredicted RBP3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 JARID2Q92833 1246 aaPredicted RBP3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 COA7Q96BR5 231 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 ZFYVE16Q7Z3T8 1539 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 SYNGAP1Q96PV0 1343 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 MMP10P09238 476 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 HCLS1P14317 486 aaPredicted RBP3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 UBXN2AP68543 259 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 SSRP1Q08945 709 aaKnown RBP3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 ZYXQ15942 572 aaKnown RBP3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 PRPF38BQ5VTL8 546 aaKnown RBP3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 ABI1Q8IZP0 508 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 CPXCR1Q8N123 301 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 CCDC24Q8N4L8 307 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 RETREG2Q8NC44 543 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 NACA2Q9H009 215 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 GZF1Q9H116 711 aaPredicted RBP3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 LRFN2Q9ULH4 789 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 CIZ1Q9ULV3 898 aaPredicted RBP3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 EXOC6BQ9Y2D4 811 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 POLR1AO95602 1720 aaPredicted RBP3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 USP19O94966 1318 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 PALM3A6NDB9 673 aaPredicted RBP3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 PDIA4P13667 645 aaKnown RBP3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 KCNA4P22459 653 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 ME1P48163 572 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 GTF2IP78347 998 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 SMC1AQ14683 1233 aaKnown RBP3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 TMEM67Q5HYA8 995 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 VPS36Q86VN1 386 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 AEBP1Q8IUX7 1158 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 LINS1Q8NG48 757 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 CARD10Q9BWT7 1032 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 CNNM2Q9H8M5 875 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 TTF2Q9UNY4 1162 aaKnown RBP3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 ANKRD36BQ8N2N9 1353 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 PTPRCP08575 1304 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 PTPDC1A2A3K4 754 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 DDX11L8A8MPP1 907 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 ERLIN2O94905 339 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 SLC8A3P57103 927 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 GPS2Q13227 327 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 SKOR2Q2VWA4 1001 aaPredicted RBP3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 USPL1Q5W0Q7 1092 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 TSPYL2Q9H2G4 693 aaPredicted RBP3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 GOPCQ9HD26 462 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 RTEL1Q9NZ71 1219 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 PUF60Q9UHX1 559 aaKnown RBP3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 KCNH4Q9UQ05 1017 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 JAG2Q9Y219 1238 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 F6X3S4 739 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 BBOX1O75936 387 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 IDEP14735 1019 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 CEBPZQ03701 1054 aaKnown RBP3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 WTAPQ15007 396 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 IFIT1BQ5T764 474 aaKnown RBP3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 TTLL5Q6EMB2 1281 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 TTLL7Q6ZT98 887 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 MICAL1Q8TDZ2 1067 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 SLC16A10Q8TF71 515 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 CHURC1Q8WUH1 139 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 SNX27Q96L92 541 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 JAKMIP1Q96N16 626 aaKnown RBP3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 SYNCQ9H7C4 482 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 ECHDC1Q9NTX5 307 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 PDRG1Q9NUG6 133 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 CHPF2Q9P2E5 772 aa3.38□□□□□ -1.87
SMCHD1-203ENST00000577880 UQCRHLA0A096LP55 91 aa3.37□□□□□ -1.87
SMCHD1-203ENST00000577880 GRM8O00222 908 aa3.37□□□□□ -1.87
SMCHD1-203ENST00000577880 UBA7P41226 1012 aa3.37□□□□□ -1.87
SMCHD1-203ENST00000577880 MRPS9P82933 396 aaKnown RBP3.37□□□□□ -1.87
SMCHD1-203ENST00000577880 TCP10Q12799 353 aa3.37□□□□□ -1.87
SMCHD1-203ENST00000577880 SEPT7Q16181 437 aaKnown RBP3.37□□□□□ -1.87
SMCHD1-203ENST00000577880 ALDH1L2Q3SY69 923 aa3.37□□□□□ -1.87
SMCHD1-203ENST00000577880 SLC9C2Q5TAH2 1124 aa3.37□□□□□ -1.87
SMCHD1-203ENST00000577880 ZNF790Q6PG37 636 aa3.37□□□□□ -1.87
SMCHD1-203ENST00000577880 CHST3Q7LGC8 479 aa3.37□□□□□ -1.87
SMCHD1-203ENST00000577880 NBPF11Q86T75 865 aa3.37□□□□□ -1.87
SMCHD1-203ENST00000577880 NCOA7Q8NI08 942 aa3.37□□□□□ -1.87
SMCHD1-203ENST00000577880 RRP36Q96EU6 259 aaKnown RBP3.37□□□□□ -1.87
SMCHD1-203ENST00000577880 RUFY1Q96T51 708 aa3.37□□□□□ -1.87
SMCHD1-203ENST00000577880 MBIPQ9NS73 344 aa3.37□□□□□ -1.87
SMCHD1-203ENST00000577880 DUOX2Q9NRD8 1548 aa3.37□□□□□ -1.87
SMCHD1-203ENST00000577880 CALM1P0DP23 149 aa3.37□□□□□ -1.87
SMCHD1-203ENST00000577880 CALM2P0DP24 149 aa3.37□□□□□ -1.87
SMCHD1-203ENST00000577880 CALM3P0DP25 149 aa3.37□□□□□ -1.87
SMCHD1-203ENST00000577880 LTKP29376 864 aa3.37□□□□□ -1.87
SMCHD1-203ENST00000577880 IARSP41252 1262 aaKnown RBP3.37□□□□□ -1.87
SMCHD1-203ENST00000577880 GNPTABQ3T906 1256 aa3.37□□□□□ -1.87
SMCHD1-203ENST00000577880 SLC27A3Q5K4L6 730 aa3.37□□□□□ -1.87
SMCHD1-203ENST00000577880 LARP1BQ659C4 914 aaKnown RBP3.37□□□□□ -1.87
SMCHD1-203ENST00000577880 NCAPG2Q86XI2 1143 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms