RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 CCDC85CA6NKD9 419 aa27.01■■□□□ 1.91
VPS53-216ENST00000574029 CCT4P50991 539 aaKnown RBP27.01■■□□□ 1.91
VPS53-216ENST00000574029 KIF23Q02241 960 aaPredicted RBP27.01■■□□□ 1.91
VPS53-216ENST00000574029 UBE3BQ7Z3V4 1068 aa27.01■■□□□ 1.91
VPS53-216ENST00000574029 MCOLN1Q9GZU1 580 aa27.01■■□□□ 1.91
VPS53-216ENST00000574029 PLA2G12BQ9BX93 195 aa27■■□□□ 1.91
VPS53-216ENST00000574029 SLC10A3P09131 477 aa26.99■■□□□ 1.91
VPS53-216ENST00000574029 SAGE1Q9NXZ1 904 aa26.99■■□□□ 1.91
VPS53-216ENST00000574029 CACNA1FO60840 1977 aa26.98■■□□□ 1.91
VPS53-216ENST00000574029 FLIIQ13045 1269 aa26.98■■□□□ 1.91
VPS53-216ENST00000574029 GCKRQ14397 625 aa26.98■■□□□ 1.91
VPS53-216ENST00000574029 DACT2Q5SW24 774 aa26.98■■□□□ 1.91
VPS53-216ENST00000574029 LEMD3Q9Y2U8 911 aa26.98■■□□□ 1.91
VPS53-216ENST00000574029 PAPPA2Q9BXP8 1791 aa26.98■■□□□ 1.91
VPS53-216ENST00000574029 AKAP11Q9UKA4 1901 aa26.97■■□□□ 1.91
VPS53-216ENST00000574029 IGHMBP2P38935 993 aaKnown RBP26.97■■□□□ 1.91
VPS53-216ENST00000574029 CASP7P55210 303 aa26.97■■□□□ 1.91
VPS53-216ENST00000574029 FKBP1BP68106 108 aa26.97■■□□□ 1.91
VPS53-216ENST00000574029 COA1Q9GZY4 146 aa26.97■■□□□ 1.91
VPS53-216ENST00000574029 RGS19P49795 217 aa26.96■■□□□ 1.91
VPS53-216ENST00000574029 CSF1RP07333 972 aa26.95■■□□□ 1.9
VPS53-216ENST00000574029 ITGA6P23229 1130 aa26.95■■□□□ 1.9
VPS53-216ENST00000574029 DGKZQ13574 1117 aa26.95■■□□□ 1.9
VPS53-216ENST00000574029 FAM161AQ3B820 660 aa26.95■■□□□ 1.9
VPS53-216ENST00000574029 STRIP1Q5VSL9 837 aa26.95■■□□□ 1.9
VPS53-216ENST00000574029 TXNRD3Q86VQ6 643 aa26.95■■□□□ 1.9
VPS53-216ENST00000574029 MXD3Q9BW11 206 aa26.95■■□□□ 1.9
VPS53-216ENST00000574029 RNF186Q9NXI6 227 aa26.95■■□□□ 1.9
VPS53-216ENST00000574029 MYO3BQ8WXR4 1341 aa26.94■■□□□ 1.9
VPS53-216ENST00000574029 FANCIQ9NVI1 1328 aa26.94■■□□□ 1.9
VPS53-216ENST00000574029 NBPF9Q3BBW0 867 aa26.94■■□□□ 1.9
VPS53-216ENST00000574029 DNAAF4Q8WXU2 420 aa26.94■■□□□ 1.9
VPS53-216ENST00000574029 CSRNP1Q96S65 589 aa26.94■■□□□ 1.9
VPS53-216ENST00000574029 ANKRD2Q9GZV1 360 aa26.94■■□□□ 1.9
VPS53-216ENST00000574029 MYH16Q9H6N6 1097 aa26.94■■□□□ 1.9
VPS53-216ENST00000574029 ZNF804BA4D1E1 1349 aa26.93■■□□□ 1.9
VPS53-216ENST00000574029 FKBP5Q13451 457 aaPredicted RBP26.93■■□□□ 1.9
VPS53-216ENST00000574029 RASAL3Q86YV0 1011 aa26.93■■□□□ 1.9
VPS53-216ENST00000574029 LINS1Q8NG48 757 aa26.93■■□□□ 1.9
VPS53-216ENST00000574029 REM2Q8IYK8 340 aaPredicted RBP26.92■■□□□ 1.9
VPS53-216ENST00000574029 OGFOD1Q8N543 542 aa26.92■■□□□ 1.9
VPS53-216ENST00000574029 VAMP4O75379 141 aa26.91■■□□□ 1.9
VPS53-216ENST00000574029 TRPA1O75762 1119 aa26.91■■□□□ 1.9
VPS53-216ENST00000574029 MMP14P50281 582 aa26.91■■□□□ 1.9
VPS53-216ENST00000574029 MPHOSPH8Q99549 860 aa26.91■■□□□ 1.9
VPS53-216ENST00000574029 SCAF8Q9UPN6 1271 aaKnown RBP26.91■■□□□ 1.9
VPS53-216ENST00000574029 WNT10BO00744 389 aa26.9■■□□□ 1.9
VPS53-216ENST00000574029 KLRK1P26718 216 aa26.9■■□□□ 1.9
VPS53-216ENST00000574029 WDR63Q8IWG1 891 aa26.9■■□□□ 1.9
VPS53-216ENST00000574029 FBXW7Q969H0 707 aa26.9■■□□□ 1.9
VPS53-216ENST00000574029 MLLT1Q03111 559 aaPredicted RBP26.89■■□□□ 1.9
VPS53-216ENST00000574029 MRS2Q9HD23 443 aa26.89■■□□□ 1.9
VPS53-216ENST00000574029 CHRNDQ07001 517 aa26.88■■□□□ 1.89
VPS53-216ENST00000574029 TTLL5Q6EMB2 1281 aa26.88■■□□□ 1.89
VPS53-216ENST00000574029 MOB2Q70IA6 237 aa26.88■■□□□ 1.89
VPS53-216ENST00000574029 A0A1B0GUL6 1792 aa26.87■■□□□ 1.89
VPS53-216ENST00000574029 PRAMEF18Q5VWM3 479 aa26.87■■□□□ 1.89
VPS53-216ENST00000574029 ANKRD18BA2A2Z9 1011 aa26.86■■□□□ 1.89
VPS53-216ENST00000574029 EXOSC9Q06265 439 aaKnown RBP26.86■■□□□ 1.89
VPS53-216ENST00000574029 UBE2Q2LH0YL09 131 aa26.85■■□□□ 1.89
VPS53-216ENST00000574029 FOXO4P98177 505 aa26.85■■□□□ 1.89
VPS53-216ENST00000574029 IRS2Q9Y4H2 1338 aa26.85■■□□□ 1.89
VPS53-216ENST00000574029 SASH1O94885 1247 aa26.84■■□□□ 1.89
VPS53-216ENST00000574029 KCNJ4P48050 445 aa26.84■■□□□ 1.89
VPS53-216ENST00000574029 GTF2IP78347 998 aa26.84■■□□□ 1.89
VPS53-216ENST00000574029 KIAA0825Q8IV33 1275 aa26.84■■□□□ 1.89
VPS53-216ENST00000574029 ZBED3Q96IU2 234 aaPredicted RBP26.84■■□□□ 1.89
VPS53-216ENST00000574029 CD209Q9NNX6 404 aa26.84■■□□□ 1.89
VPS53-216ENST00000574029 HDAC9Q9UKV0 1011 aa26.84■■□□□ 1.89
VPS53-216ENST00000574029 SALL2Q9Y467 1007 aaPredicted RBP26.84■■□□□ 1.89
VPS53-216ENST00000574029 BEND3Q5T5X7 828 aa26.83■■□□□ 1.89
VPS53-216ENST00000574029 C15orf52Q6ZUT6 534 aaKnown RBP26.83■■□□□ 1.89
VPS53-216ENST00000574029 F6X3S4 739 aa26.82■■□□□ 1.88
VPS53-216ENST00000574029 NF2P35240 595 aa26.82■■□□□ 1.88
VPS53-216ENST00000574029 IFIT5Q13325 482 aaKnown RBP26.81■■□□□ 1.88
VPS53-216ENST00000574029 TTLL12Q14166 644 aaPredicted RBP26.81■■□□□ 1.88
VPS53-216ENST00000574029 APOBEC3FQ8IUX4 373 aaKnown RBP26.81■■□□□ 1.88
VPS53-216ENST00000574029 SNAP23O00161 211 aa26.8■■□□□ 1.88
VPS53-216ENST00000574029 ANP32CO43423 234 aa26.8■■□□□ 1.88
VPS53-216ENST00000574029 TAF5LO75529 589 aa26.8■■□□□ 1.88
VPS53-216ENST00000574029 SPINK5Q9NQ38 1064 aaPredicted RBP26.8■■□□□ 1.88
VPS53-216ENST00000574029 HELBQ8NG08 1087 aaPredicted RBP26.79■■□□□ 1.88
VPS53-216ENST00000574029 ECM29Q5VYK3 1845 aa26.79■■□□□ 1.88
VPS53-216ENST00000574029 TM4SF4P48230 202 aa26.78■■□□□ 1.88
VPS53-216ENST00000574029 CTU1Q7Z7A3 348 aaKnown RBP26.78■■□□□ 1.88
VPS53-216ENST00000574029 CERS5Q8N5B7 392 aa26.78■■□□□ 1.88
VPS53-216ENST00000574029 CHMP3Q9Y3E7 222 aa26.78■■□□□ 1.88
VPS53-216ENST00000574029 COL1A1P02452 1464 aaPredicted RBP26.78■■□□□ 1.88
VPS53-216ENST00000574029 SLC34A2O95436 690 aa26.77■■□□□ 1.88
VPS53-216ENST00000574029 IL1R1P14778 569 aa26.77■■□□□ 1.88
VPS53-216ENST00000574029 LMBR1LQ6UX01 489 aa26.77■■□□□ 1.88
VPS53-216ENST00000574029 MTMR14Q8NCE2 650 aa26.77■■□□□ 1.88
VPS53-216ENST00000574029 GRM8O00222 908 aa26.76■■□□□ 1.87
VPS53-216ENST00000574029 PTPN12Q05209 780 aaKnown RBP26.76■■□□□ 1.87
VPS53-216ENST00000574029 EPHA10Q5JZY3 1008 aa26.76■■□□□ 1.87
VPS53-216ENST00000574029 ARMC9Q7Z3E5 817 aa26.76■■□□□ 1.87
VPS53-216ENST00000574029 DLGAP5Q15398 846 aa26.75■■□□□ 1.87
VPS53-216ENST00000574029 LDLRAD1Q5T700 205 aa26.75■■□□□ 1.87
VPS53-216ENST00000574029 ZNF804AQ7Z570 1209 aa26.75■■□□□ 1.87
VPS53-216ENST00000574029 FKBP1AP62942 108 aaKnown RBP26.74■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms