RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 USP17L8P0C7I0 530 aa20.65■□□□□ 0.9
SNX1-213ENST00000561026 BEND3Q5T5X7 828 aa20.65■□□□□ 0.9
SNX1-213ENST00000561026 MPHOSPH8Q99549 860 aa20.65■□□□□ 0.9
SNX1-213ENST00000561026 GGA3Q9NZ52 723 aa20.65■□□□□ 0.9
SNX1-213ENST00000561026 SULF1Q8IWU6 871 aa20.64■□□□□ 0.89
SNX1-213ENST00000561026 ANKRD2Q9GZV1 360 aa20.64■□□□□ 0.89
SNX1-213ENST00000561026 COA1Q9GZY4 146 aa20.64■□□□□ 0.89
SNX1-213ENST00000561026 ASTN2O75129 1339 aaPredicted RBP20.64■□□□□ 0.89
SNX1-213ENST00000561026 HUNKP57058 714 aa20.63■□□□□ 0.89
SNX1-213ENST00000561026 SCARF1Q14162 830 aa20.63■□□□□ 0.89
SNX1-213ENST00000561026 TXNRD3Q86VQ6 643 aa20.63■□□□□ 0.89
SNX1-213ENST00000561026 POLR2AP24928 1970 aaKnown RBP20.63■□□□□ 0.89
SNX1-213ENST00000561026 FOXO4P98177 505 aa20.62■□□□□ 0.89
SNX1-213ENST00000561026 C2orf69Q8N8R5 385 aa20.62■□□□□ 0.89
SNX1-213ENST00000561026 GBA2Q9HCG7 927 aaPredicted RBP20.62■□□□□ 0.89
SNX1-213ENST00000561026 MYOZ2Q9NPC6 264 aa20.62■□□□□ 0.89
SNX1-213ENST00000561026 ZNF804BA4D1E1 1349 aa20.62■□□□□ 0.89
SNX1-213ENST00000561026 ANKRD18BA2A2Z9 1011 aa20.61■□□□□ 0.89
SNX1-213ENST00000561026 DACT2Q5SW24 774 aa20.61■□□□□ 0.89
SNX1-213ENST00000561026 STRIP1Q5VSL9 837 aa20.61■□□□□ 0.89
SNX1-213ENST00000561026 ANGEL2Q5VTE6 544 aaKnown RBP20.61■□□□□ 0.89
SNX1-213ENST00000561026 PSME4Q14997 1843 aa20.61■□□□□ 0.89
SNX1-213ENST00000561026 SPEF2Q9C093 1822 aa20.61■□□□□ 0.89
SNX1-213ENST00000561026 BRPF1P55201 1214 aaPredicted RBP20.6■□□□□ 0.89
SNX1-213ENST00000561026 CHRNDQ07001 517 aa20.6■□□□□ 0.89
SNX1-213ENST00000561026 NOGQ13253 232 aa20.6■□□□□ 0.89
SNX1-213ENST00000561026 MXD3Q9BW11 206 aa20.6■□□□□ 0.89
SNX1-213ENST00000561026 ZNF521Q96K83 1311 aa20.6■□□□□ 0.89
SNX1-213ENST00000561026 KLRK1P26718 216 aa20.59■□□□□ 0.89
SNX1-213ENST00000561026 IFIT5Q13325 482 aaKnown RBP20.59■□□□□ 0.89
SNX1-213ENST00000561026 GRM8O00222 908 aa20.59■□□□□ 0.89
SNX1-213ENST00000561026 CA12O43570 354 aa20.59■□□□□ 0.89
SNX1-213ENST00000561026 RGMBQ6NW40 437 aa20.59■□□□□ 0.89
SNX1-213ENST00000561026 OGFOD1Q8N543 542 aa20.59■□□□□ 0.89
SNX1-213ENST00000561026 CDCA5Q96FF9 252 aa20.59■□□□□ 0.89
SNX1-213ENST00000561026 MYO3BQ8WXR4 1341 aa20.58■□□□□ 0.89
SNX1-213ENST00000561026 KCNJ4P48050 445 aa20.58■□□□□ 0.88
SNX1-213ENST00000561026 TTLL5Q6EMB2 1281 aa20.58■□□□□ 0.88
SNX1-213ENST00000561026 LMBR1LQ6UX01 489 aa20.58■□□□□ 0.88
SNX1-213ENST00000561026 FBXW7Q969H0 707 aa20.58■□□□□ 0.88
SNX1-213ENST00000561026 ZIC5Q96T25 663 aa20.58■□□□□ 0.88
SNX1-213ENST00000561026 CHMP3Q9Y3E7 222 aa20.58■□□□□ 0.88
SNX1-213ENST00000561026 PITPNM2Q9BZ72 1349 aa20.58■□□□□ 0.88
SNX1-213ENST00000561026 FAM155AB1AL88 458 aaPredicted RBP20.57■□□□□ 0.88
SNX1-213ENST00000561026 ALDH1L1O75891 902 aa20.57■□□□□ 0.88
SNX1-213ENST00000561026 EPHA10Q5JZY3 1008 aa20.57■□□□□ 0.88
SNX1-213ENST00000561026 CCDC102AQ96A19 550 aa20.57■□□□□ 0.88
SNX1-213ENST00000561026 TSKSQ9UJT2 592 aa20.57■□□□□ 0.88
SNX1-213ENST00000561026 TAF5LO75529 589 aa20.56■□□□□ 0.88
SNX1-213ENST00000561026 MMP14P50281 582 aa20.56■□□□□ 0.88
SNX1-213ENST00000561026 NBPF9Q3BBW0 867 aa20.56■□□□□ 0.88
SNX1-213ENST00000561026 SLC4A10Q6U841 1118 aa20.56■□□□□ 0.88
SNX1-213ENST00000561026 HELBQ8NG08 1087 aaPredicted RBP20.56■□□□□ 0.88
SNX1-213ENST00000561026 C9orf78Q9NZ63 289 aaPredicted RBP20.56■□□□□ 0.88
SNX1-213ENST00000561026 IRS2Q9Y4H2 1338 aa20.55■□□□□ 0.88
SNX1-213ENST00000561026 SNAP23O00161 211 aa20.55■□□□□ 0.88
SNX1-213ENST00000561026 ZNF157P51786 506 aaPredicted RBP20.55■□□□□ 0.88
SNX1-213ENST00000561026 CCDC57Q2TAC2 916 aa20.55■□□□□ 0.88
SNX1-213ENST00000561026 C15orf52Q6ZUT6 534 aaKnown RBP20.55■□□□□ 0.88
SNX1-213ENST00000561026 SRCIN1Q9C0H9 1055 aa20.55■□□□□ 0.88
SNX1-213ENST00000561026 CD209Q9NNX6 404 aa20.55■□□□□ 0.88
SNX1-213ENST00000561026 WNT10BO00744 389 aa20.54■□□□□ 0.88
SNX1-213ENST00000561026 GTF2IP78347 998 aa20.54■□□□□ 0.88
SNX1-213ENST00000561026 FKBP1BP68106 108 aa20.53■□□□□ 0.88
SNX1-213ENST00000561026 LDHAL6AQ6ZMR3 332 aa20.53■□□□□ 0.88
SNX1-213ENST00000561026 SCAF8Q9UPN6 1271 aaKnown RBP20.53■□□□□ 0.88
SNX1-213ENST00000561026 KIAA0825Q8IV33 1275 aa20.52■□□□□ 0.88
SNX1-213ENST00000561026 ZNF594Q96JF6 807 aaPredicted RBP20.52■□□□□ 0.88
SNX1-213ENST00000561026 ZNF646O15015 1829 aaPredicted RBP20.52■□□□□ 0.87
SNX1-213ENST00000561026 KIF23Q02241 960 aaPredicted RBP20.51■□□□□ 0.87
SNX1-213ENST00000561026 TAF7LQ5H9L4 462 aa20.51■□□□□ 0.87
SNX1-213ENST00000561026 HDAC9Q9UKV0 1011 aa20.51■□□□□ 0.87
SNX1-213ENST00000561026 E9PSI1 815 aa20.5■□□□□ 0.87
SNX1-213ENST00000561026 SLC10A3P09131 477 aa20.5■□□□□ 0.87
SNX1-213ENST00000561026 NBPF7P0C2Y1 421 aaPredicted RBP20.5■□□□□ 0.87
SNX1-213ENST00000561026 PRAMEF18Q5VWM3 479 aa20.5■□□□□ 0.87
SNX1-213ENST00000561026 MRPL50Q8N5N7 158 aaKnown RBP20.5■□□□□ 0.87
SNX1-213ENST00000561026 ABHD8Q96I13 439 aa20.5■□□□□ 0.87
SNX1-213ENST00000561026 KAZALD1Q96I82 304 aa20.5■□□□□ 0.87
SNX1-213ENST00000561026 CNNM1Q9NRU3 951 aa20.5■□□□□ 0.87
SNX1-213ENST00000561026 UTYO14607 1347 aa20.5■□□□□ 0.87
SNX1-213ENST00000561026 SASH1O94885 1247 aa20.49■□□□□ 0.87
SNX1-213ENST00000561026 IL1R1P14778 569 aa20.49■□□□□ 0.87
SNX1-213ENST00000561026 ZNF804AQ7Z570 1209 aa20.49■□□□□ 0.87
SNX1-213ENST00000561026 SUCLG2Q96I99 432 aa20.49■□□□□ 0.87
SNX1-213ENST00000561026 ZBED3Q96IU2 234 aaPredicted RBP20.49■□□□□ 0.87
SNX1-213ENST00000561026 PLIN1O60240 522 aa20.48■□□□□ 0.87
SNX1-213ENST00000561026 CERS5Q8N5B7 392 aa20.48■□□□□ 0.87
SNX1-213ENST00000561026 SLFN5Q08AF3 891 aa20.47■□□□□ 0.87
SNX1-213ENST00000561026 MOB2Q70IA6 237 aa20.47■□□□□ 0.87
SNX1-213ENST00000561026 PTPRCP08575 1304 aa20.47■□□□□ 0.87
SNX1-213ENST00000561026 RASAL3Q86YV0 1011 aa20.46■□□□□ 0.87
SNX1-213ENST00000561026 SSH1Q8WYL5 1049 aa20.46■□□□□ 0.87
SNX1-213ENST00000561026 CSRNP1Q96S65 589 aa20.46■□□□□ 0.87
SNX1-213ENST00000561026 SAGE1Q9NXZ1 904 aa20.46■□□□□ 0.87
SNX1-213ENST00000561026 PAPPA2Q9BXP8 1791 aa20.46■□□□□ 0.87
SNX1-213ENST00000561026 UBE2Q2LH0YL09 131 aa20.46■□□□□ 0.87
SNX1-213ENST00000561026 FKBP1AP62942 108 aaKnown RBP20.46■□□□□ 0.87
SNX1-213ENST00000561026 DLGAP5Q15398 846 aa20.46■□□□□ 0.87
SNX1-213ENST00000561026 APOBEC3FQ8IUX4 373 aaKnown RBP20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms