RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 ZNF804BA4D1E1 1349 aa13.62□□□□□ -0.23
USP3-218ENST00000560202 XDHP47989 1333 aa13.62□□□□□ -0.23
USP3-218ENST00000560202 GOLIM4O00461 696 aa13.61□□□□□ -0.23
USP3-218ENST00000560202 BCAMP50895 628 aa13.61□□□□□ -0.23
USP3-218ENST00000560202 STYK1Q6J9G0 422 aa13.61□□□□□ -0.23
USP3-218ENST00000560202 SP8Q8IXZ3 490 aa13.61□□□□□ -0.23
USP3-218ENST00000560202 ZNF622Q969S3 477 aaKnown RBP eCLIP13.61□□□□□ -0.23
USP3-218ENST00000560202 SNRKQ9NRH2 765 aa13.61□□□□□ -0.23
USP3-218ENST00000560202 C10orf71Q711Q0 1435 aa13.61□□□□□ -0.23
USP3-218ENST00000560202 ARAP2Q8WZ64 1704 aa13.6□□□□□ -0.23
USP3-218ENST00000560202 POLD1P28340 1107 aa13.6□□□□□ -0.23
USP3-218ENST00000560202 CHRNA5P30532 468 aa13.6□□□□□ -0.23
USP3-218ENST00000560202 MCAMP43121 646 aa13.6□□□□□ -0.23
USP3-218ENST00000560202 GPSM2P81274 684 aa13.6□□□□□ -0.23
USP3-218ENST00000560202 FKBP4Q02790 459 aaKnown RBP eCLIP13.6□□□□□ -0.23
USP3-218ENST00000560202 CAVIN4Q5BKX8 364 aa13.6□□□□□ -0.23
USP3-218ENST00000560202 ESYT1Q9BSJ8 1104 aa13.6□□□□□ -0.23
USP3-218ENST00000560202 DIAPH3Q9NSV4 1193 aa13.6□□□□□ -0.23
USP3-218ENST00000560202 NSFL1CQ9UNZ2 370 aaKnown RBP13.6□□□□□ -0.23
USP3-218ENST00000560202 ATP6V0A2Q9Y487 856 aa13.6□□□□□ -0.23
USP3-218ENST00000560202 A0A1B0GUL6 1792 aa13.6□□□□□ -0.23
USP3-218ENST00000560202 PSDA5PKW4 1024 aaPredicted RBP13.59□□□□□ -0.23
USP3-218ENST00000560202 HIP1O00291 1037 aa13.59□□□□□ -0.23
USP3-218ENST00000560202 ZAP70P43403 619 aa13.59□□□□□ -0.23
USP3-218ENST00000560202 GYG1P46976 350 aa13.59□□□□□ -0.23
USP3-218ENST00000560202 ILDR2Q71H61 639 aa13.59□□□□□ -0.23
USP3-218ENST00000560202 KBTBD3Q8NAB2 608 aa13.59□□□□□ -0.23
USP3-218ENST00000560202 COL11A2P13942 1736 aaPredicted RBP13.59□□□□□ -0.23
USP3-218ENST00000560202 ATP2B4P23634 1241 aa13.59□□□□□ -0.23
USP3-218ENST00000560202 KLRK1P26718 216 aa13.59□□□□□ -0.23
USP3-218ENST00000560202 PI16Q6UXB8 463 aa13.59□□□□□ -0.23
USP3-218ENST00000560202 FBXO33Q7Z6M2 555 aa13.59□□□□□ -0.23
USP3-218ENST00000560202 FAM84BQ96KN1 310 aaPredicted RBP13.59□□□□□ -0.23
USP3-218ENST00000560202 ANTXR1Q9H6X2 564 aa13.59□□□□□ -0.23
USP3-218ENST00000560202 GNL3LQ9NVN8 582 aaKnown RBP13.59□□□□□ -0.23
USP3-218ENST00000560202 PODXL2Q9NZ53 605 aa13.59□□□□□ -0.23
USP3-218ENST00000560202 HMG20BQ9P0W2 317 aa13.59□□□□□ -0.23
USP3-218ENST00000560202 RFX7Q2KHR2 1363 aa13.58□□□□□ -0.24
USP3-218ENST00000560202 IRS2Q9Y4H2 1338 aa13.58□□□□□ -0.24
USP3-218ENST00000560202 RASGRF1Q13972 1273 aa13.58□□□□□ -0.24
USP3-218ENST00000560202 CWC27Q6UX04 472 aaKnown RBP13.58□□□□□ -0.24
USP3-218ENST00000560202 TICAM2Q86XR7 235 aa13.58□□□□□ -0.24
USP3-218ENST00000560202 VPS37DQ86XT2 251 aa13.58□□□□□ -0.24
USP3-218ENST00000560202 SPATA5Q8NB90 893 aa13.58□□□□□ -0.24
USP3-218ENST00000560202 CNKSR1Q969H4 720 aa13.58□□□□□ -0.24
USP3-218ENST00000560202 GGA1Q9UJY5 639 aa13.58□□□□□ -0.24
USP3-218ENST00000560202 UFL1O94874 794 aa13.57□□□□□ -0.24
USP3-218ENST00000560202 REC8O95072 547 aa13.57□□□□□ -0.24
USP3-218ENST00000560202 CYP2E1P05181 493 aaPredicted RBP13.57□□□□□ -0.24
USP3-218ENST00000560202 HIBADHP31937 336 aaKnown RBP13.57□□□□□ -0.24
USP3-218ENST00000560202 PRPF40BQ6NWY9 871 aaKnown RBP13.57□□□□□ -0.24
USP3-218ENST00000560202 RUFY2Q8WXA3 655 aa13.57□□□□□ -0.24
USP3-218ENST00000560202 TMX4Q9H1E5 349 aaPredicted RBP13.57□□□□□ -0.24
USP3-218ENST00000560202 SGSM2O43147 1006 aa13.56□□□□□ -0.24
USP3-218ENST00000560202 NMIQ13287 307 aaPredicted RBP13.56□□□□□ -0.24
USP3-218ENST00000560202 TTF1Q15361 905 aaPredicted RBP13.56□□□□□ -0.24
USP3-218ENST00000560202 C15orf52Q6ZUT6 534 aaKnown RBP13.56□□□□□ -0.24
USP3-218ENST00000560202 TXNRD3Q86VQ6 643 aa13.56□□□□□ -0.24
USP3-218ENST00000560202 TBC1D16Q8TBP0 767 aa13.56□□□□□ -0.24
USP3-218ENST00000560202 TBC1D32Q96NH3 1257 aa13.56□□□□□ -0.24
USP3-218ENST00000560202 C22orf23Q9BZE7 217 aa13.56□□□□□ -0.24
USP3-218ENST00000560202 IL25Q9H293 177 aa13.56□□□□□ -0.24
USP3-218ENST00000560202 OLFM4Q6UX06 510 aa13.56□□□□□ -0.24
USP3-218ENST00000560202 MPNDQ8N594 471 aa13.56□□□□□ -0.24
USP3-218ENST00000560202 FAM227BQ96M60 508 aa13.56□□□□□ -0.24
USP3-218ENST00000560202 SGIP1Q9BQI5 828 aa13.56□□□□□ -0.24
USP3-218ENST00000560202 POLLQ9UGP5 575 aa13.56□□□□□ -0.24
USP3-218ENST00000560202 IQSEC3Q9UPP2 1182 aaPredicted RBP13.56□□□□□ -0.24
USP3-218ENST00000560202 LRRC37AA6NMS7 1700 aa13.55□□□□□ -0.24
USP3-218ENST00000560202 C6orf229H3BNL8 230 aa13.55□□□□□ -0.24
USP3-218ENST00000560202 SEMA3EO15041 775 aa13.55□□□□□ -0.24
USP3-218ENST00000560202 DPEP1P16444 411 aa13.55□□□□□ -0.24
USP3-218ENST00000560202 LRRFIP1Q32MZ4 808 aaKnown RBP13.55□□□□□ -0.24
USP3-218ENST00000560202 GPR101Q96P66 508 aaPredicted RBP13.55□□□□□ -0.24
USP3-218ENST00000560202 USP26Q9BXU7 913 aa13.55□□□□□ -0.24
USP3-218ENST00000560202 PIH1D3Q9NQM4 214 aaKnown RBP13.55□□□□□ -0.24
USP3-218ENST00000560202 DENND2AQ9ULE3 1009 aa13.55□□□□□ -0.24
USP3-218ENST00000560202 AK9Q5TCS8 1911 aa13.55□□□□□ -0.24
USP3-218ENST00000560202 A0A0D9SFI3 127 aa13.54□□□□□ -0.24
USP3-218ENST00000560202 A0A0G2JLW4 131 aa13.54□□□□□ -0.24
USP3-218ENST00000560202 ZBTB22O15209 634 aa13.54□□□□□ -0.24
USP3-218ENST00000560202 RNF113AO15541 343 aaKnown RBP13.54□□□□□ -0.24
USP3-218ENST00000560202 CHGBP05060 677 aa13.54□□□□□ -0.24
USP3-218ENST00000560202 TGFB2P61812 414 aa13.54□□□□□ -0.24
USP3-218ENST00000560202 DPP8Q6V1X1 898 aaPredicted RBP13.54□□□□□ -0.24
USP3-218ENST00000560202 ANO2Q9NQ90 1003 aa13.54□□□□□ -0.24
USP3-218ENST00000560202 RAD50Q92878 1312 aa13.54□□□□□ -0.24
USP3-218ENST00000560202 FRAT2O75474 233 aaPredicted RBP13.53□□□□□ -0.24
USP3-218ENST00000560202 ZFYP08048 801 aaPredicted RBP13.53□□□□□ -0.24
USP3-218ENST00000560202 KCNA3P22001 575 aa13.53□□□□□ -0.24
USP3-218ENST00000560202 PTGER2P43116 358 aa13.53□□□□□ -0.24
USP3-218ENST00000560202 RBM25P49756 843 aaKnown RBP13.53□□□□□ -0.24
USP3-218ENST00000560202 ZNF804AQ7Z570 1209 aa13.53□□□□□ -0.24
USP3-218ENST00000560202 TTLL6Q8N841 843 aa13.53□□□□□ -0.24
USP3-218ENST00000560202 C7orf43Q8WVR3 580 aa13.53□□□□□ -0.24
USP3-218ENST00000560202 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.53□□□□□ -0.24
USP3-218ENST00000560202 MED23Q9ULK4 1368 aa13.53□□□□□ -0.24
USP3-218ENST00000560202 AKAP11Q9UKA4 1901 aa13.53□□□□□ -0.24
USP3-218ENST00000560202 IDH1O75874 414 aaKnown RBP13.53□□□□□ -0.24
USP3-218ENST00000560202 ZSCAN25Q6NSZ9 544 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms