RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 C15orf52Q6ZUT6 534 aaKnown RBP12.42□□□□□ -0.42
USP3-216ENST00000559873 VPS37DQ86XT2 251 aa12.42□□□□□ -0.42
USP3-216ENST00000559873 SIRT2Q8IXJ6 389 aa12.42□□□□□ -0.42
USP3-216ENST00000559873 GPR108Q9NPR9 543 aa12.42□□□□□ -0.42
USP3-216ENST00000559873 ZNF609O15014 1411 aa12.42□□□□□ -0.42
USP3-216ENST00000559873 DICER1Q9UPY3 1922 aaKnown RBP12.41□□□□□ -0.42
USP3-216ENST00000559873 PODNQ7Z5L7 613 aa12.41□□□□□ -0.42
USP3-216ENST00000559873 GCC1Q96CN9 775 aa12.41□□□□□ -0.42
USP3-216ENST00000559873 COA1Q9GZY4 146 aa12.41□□□□□ -0.42
USP3-216ENST00000559873 ZNRF3Q9ULT6 936 aa12.41□□□□□ -0.42
USP3-216ENST00000559873 SBF1O95248 1867 aa12.4□□□□□ -0.42
USP3-216ENST00000559873 A0A1B0GUL7 405 aa12.4□□□□□ -0.42
USP3-216ENST00000559873 ECE2O60344 883 aa12.4□□□□□ -0.42
USP3-216ENST00000559873 FGFR2P21802 821 aa12.4□□□□□ -0.42
USP3-216ENST00000559873 TNNI3KQ59H18 835 aa12.4□□□□□ -0.42
USP3-216ENST00000559873 GORABQ5T7V8 394 aa12.4□□□□□ -0.42
USP3-216ENST00000559873 CLASRPQ8N2M8 674 aaKnown RBP12.4□□□□□ -0.42
USP3-216ENST00000559873 RHPN1Q8TCX5 695 aa12.4□□□□□ -0.42
USP3-216ENST00000559873 GPR101Q96P66 508 aaPredicted RBP12.4□□□□□ -0.42
USP3-216ENST00000559873 LRRCC1Q9C099 1032 aa12.4□□□□□ -0.42
USP3-216ENST00000559873 DCTPP1Q9H773 170 aa12.4□□□□□ -0.42
USP3-216ENST00000559873 DBNDD1Q9H9R9 158 aa12.4□□□□□ -0.42
USP3-216ENST00000559873 GNL3LQ9NVN8 582 aaKnown RBP12.4□□□□□ -0.42
USP3-216ENST00000559873 FPGT-TNNI3KV9GXZ4 949 aa12.4□□□□□ -0.42
USP3-216ENST00000559873 ARAP2Q8WZ64 1704 aa12.4□□□□□ -0.43
USP3-216ENST00000559873 SASH1O94885 1247 aa12.39□□□□□ -0.43
USP3-216ENST00000559873 HIBADHP31937 336 aaKnown RBP12.39□□□□□ -0.43
USP3-216ENST00000559873 TNIP1Q15025 636 aa12.39□□□□□ -0.43
USP3-216ENST00000559873 ERICH6BQ5W0A0 696 aa12.39□□□□□ -0.43
USP3-216ENST00000559873 DPY19L2Q6NUT2 758 aa12.39□□□□□ -0.43
USP3-216ENST00000559873 NEUROD6Q96NK8 337 aa12.39□□□□□ -0.43
USP3-216ENST00000559873 KDM2BQ8NHM5 1336 aa12.38□□□□□ -0.43
USP3-216ENST00000559873 CCDC88AQ3V6T2 1871 aa12.38□□□□□ -0.43
USP3-216ENST00000559873 FZD9O00144 591 aa12.38□□□□□ -0.43
USP3-216ENST00000559873 APBB1O00213 710 aa12.38□□□□□ -0.43
USP3-216ENST00000559873 FRAT2O75474 233 aaPredicted RBP12.38□□□□□ -0.43
USP3-216ENST00000559873 KLRK1P26718 216 aa12.38□□□□□ -0.43
USP3-216ENST00000559873 PRELPP51888 382 aa12.38□□□□□ -0.43
USP3-216ENST00000559873 DOK7Q18PE1 504 aa12.38□□□□□ -0.43
USP3-216ENST00000559873 IRS2Q9Y4H2 1338 aa12.37□□□□□ -0.43
USP3-216ENST00000559873 SNAP23O00161 211 aa12.37□□□□□ -0.43
USP3-216ENST00000559873 SEMA3EO15041 775 aa12.37□□□□□ -0.43
USP3-216ENST00000559873 IFIT2P09913 472 aaKnown RBP12.37□□□□□ -0.43
USP3-216ENST00000559873 GYG1P46976 350 aa12.37□□□□□ -0.43
USP3-216ENST00000559873 CCDC158Q5M9N0 1113 aa12.37□□□□□ -0.43
USP3-216ENST00000559873 CIAPIN1Q6FI81 312 aa12.37□□□□□ -0.43
USP3-216ENST00000559873 AACSQ86V21 672 aa12.37□□□□□ -0.43
USP3-216ENST00000559873 GPC2Q8N158 579 aa12.37□□□□□ -0.43
USP3-216ENST00000559873 XAGE2Q96GT9 111 aa12.37□□□□□ -0.43
USP3-216ENST00000559873 FAM84BQ96KN1 310 aaPredicted RBP12.37□□□□□ -0.43
USP3-216ENST00000559873 CD209Q9NNX6 404 aa12.37□□□□□ -0.43
USP3-216ENST00000559873 COL4A5P29400 1685 aa12.37□□□□□ -0.43
USP3-216ENST00000559873 MYO3BQ8WXR4 1341 aa12.37□□□□□ -0.43
USP3-216ENST00000559873 IL1R1P14778 569 aa12.36□□□□□ -0.43
USP3-216ENST00000559873 FBXO33Q7Z6M2 555 aa12.36□□□□□ -0.43
USP3-216ENST00000559873 TXNRD3Q86VQ6 643 aa12.36□□□□□ -0.43
USP3-216ENST00000559873 FBXW7Q969H0 707 aa12.36□□□□□ -0.43
USP3-216ENST00000559873 GPATCH3Q96I76 525 aa12.36□□□□□ -0.43
USP3-216ENST00000559873 IL1RAPL2Q9NP60 686 aa12.36□□□□□ -0.43
USP3-216ENST00000559873 ZNF541Q9H0D2 1346 aa12.36□□□□□ -0.43
USP3-216ENST00000559873 USP17L3A6NCW0 530 aa12.35□□□□□ -0.43
USP3-216ENST00000559873 USP17L4A6NCW7 530 aa12.35□□□□□ -0.43
USP3-216ENST00000559873 WTIPA6NIX2 430 aaPredicted RBP12.35□□□□□ -0.43
USP3-216ENST00000559873 ZBTB22O15209 634 aa12.35□□□□□ -0.43
USP3-216ENST00000559873 RAD17O75943 681 aa12.35□□□□□ -0.43
USP3-216ENST00000559873 UQCRFS1P1P0C7P4 283 aa12.35□□□□□ -0.43
USP3-216ENST00000559873 YY1P25490 414 aa12.35□□□□□ -0.43
USP3-216ENST00000559873 TIMM10P62072 90 aa12.35□□□□□ -0.43
USP3-216ENST00000559873 TTC39AQ5SRH9 613 aa12.35□□□□□ -0.43
USP3-216ENST00000559873 STRIP1Q5VSL9 837 aa12.35□□□□□ -0.43
USP3-216ENST00000559873 CCDC102BQ68D86 513 aa12.35□□□□□ -0.43
USP3-216ENST00000559873 USP17L1Q7RTZ2 530 aa12.35□□□□□ -0.43
USP3-216ENST00000559873 TBC1D22AQ8WUA7 517 aa12.35□□□□□ -0.43
USP3-216ENST00000559873 DENND2AQ9ULE3 1009 aa12.35□□□□□ -0.43
USP3-216ENST00000559873 GLTPD2A6NH11 291 aa12.34□□□□□ -0.43
USP3-216ENST00000559873 YDJCA8MPS7 323 aa12.34□□□□□ -0.43
USP3-216ENST00000559873 RPS12P25398 132 aaKnown RBP12.34□□□□□ -0.43
USP3-216ENST00000559873 LMOD1P29536 600 aaPredicted RBP12.34□□□□□ -0.43
USP3-216ENST00000559873 ADORA1P30542 326 aa12.34□□□□□ -0.43
USP3-216ENST00000559873 BCAMP50895 628 aa12.34□□□□□ -0.43
USP3-216ENST00000559873 CXCL9Q07325 125 aa12.34□□□□□ -0.43
USP3-216ENST00000559873 SMC5Q8IY18 1101 aa12.34□□□□□ -0.43
USP3-216ENST00000559873 TDRD7Q8NHU6 1098 aaKnown RBP12.34□□□□□ -0.43
USP3-216ENST00000559873 EAF2Q96CJ1 260 aaPredicted RBP12.34□□□□□ -0.43
USP3-216ENST00000559873 DBNDD2Q9BQY9 259 aa12.34□□□□□ -0.43
USP3-216ENST00000559873 DBNLQ9UJU6 430 aaKnown RBP12.34□□□□□ -0.43
USP3-216ENST00000559873 GJA3Q9Y6H8 435 aa12.34□□□□□ -0.43
USP3-216ENST00000559873 PDS5AQ29RF7 1337 aaKnown RBP12.34□□□□□ -0.43
USP3-216ENST00000559873 PSME4Q14997 1843 aa12.33□□□□□ -0.44
USP3-216ENST00000559873 IQCA1LA6NCM1 817 aa12.33□□□□□ -0.44
USP3-216ENST00000559873 ARID4AP29374 1257 aaPredicted RBP12.33□□□□□ -0.44
USP3-216ENST00000559873 PHKA1P46020 1223 aa12.33□□□□□ -0.44
USP3-216ENST00000559873 FKBP1AP62942 108 aaKnown RBP12.33□□□□□ -0.44
USP3-216ENST00000559873 GTF2IP78347 998 aa12.33□□□□□ -0.44
USP3-216ENST00000559873 ANKRD45Q5TZF3 282 aa12.33□□□□□ -0.44
USP3-216ENST00000559873 TTLL5Q6EMB2 1281 aa12.33□□□□□ -0.44
USP3-216ENST00000559873 RSBN1LQ6PCB5 846 aaPredicted RBP12.33□□□□□ -0.44
USP3-216ENST00000559873 ZGPATQ8N5A5 531 aaKnown RBP12.33□□□□□ -0.44
USP3-216ENST00000559873 AGBL3Q8NEM8 1001 aa12.33□□□□□ -0.44
USP3-216ENST00000559873 WDR66Q8TBY9 1149 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 165 ms