RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 CDC25BP30305 580 aa6.22□□□□□ -1.41
USP28-213ENST00000544967 DHX8Q14562 1220 aaKnown RBP6.22□□□□□ -1.41
USP28-213ENST00000544967 DDX21Q9NR30 783 aaKnown RBP eCLIP6.22□□□□□ -1.41
USP28-213ENST00000544967 ADCY9O60503 1353 aa6.22□□□□□ -1.41
USP28-213ENST00000544967 UTYO14607 1347 aa6.22□□□□□ -1.41
USP28-213ENST00000544967 COL4A1P02462 1669 aa6.22□□□□□ -1.41
USP28-213ENST00000544967 RPAP1Q9BWH6 1393 aaPredicted RBP6.22□□□□□ -1.41
USP28-213ENST00000544967 ADCY5O95622 1261 aa6.22□□□□□ -1.41
USP28-213ENST00000544967 CAVIN2O95810 425 aa6.22□□□□□ -1.41
USP28-213ENST00000544967 MX1P20591 662 aa6.22□□□□□ -1.41
USP28-213ENST00000544967 ATP6V1AP38606 617 aa6.22□□□□□ -1.41
USP28-213ENST00000544967 KCNJ4P48050 445 aa6.22□□□□□ -1.41
USP28-213ENST00000544967 MICAL1Q8TDZ2 1067 aa6.22□□□□□ -1.41
USP28-213ENST00000544967 MTFR1LQ9H019 292 aa6.22□□□□□ -1.41
USP28-213ENST00000544967 CCDC171Q6TFL3 1326 aa6.22□□□□□ -1.41
USP28-213ENST00000544967 CHD4Q14839 1912 aa6.22□□□□□ -1.41
USP28-213ENST00000544967 CLGNO14967 610 aa6.22□□□□□ -1.41
USP28-213ENST00000544967 STARD3NLO95772 234 aa6.22□□□□□ -1.41
USP28-213ENST00000544967 FOXD4Q12950 439 aaPredicted RBP6.22□□□□□ -1.41
USP28-213ENST00000544967 DNAJC10Q8IXB1 793 aa6.22□□□□□ -1.41
USP28-213ENST00000544967 V9GYY5 206 aaPredicted RBP6.22□□□□□ -1.41
USP28-213ENST00000544967 ZNF609O15014 1411 aa6.21□□□□□ -1.41
USP28-213ENST00000544967 WDR33Q9C0J8 1336 aaKnown RBP6.21□□□□□ -1.41
USP28-213ENST00000544967 TTC22Q5TAA0 569 aa6.21□□□□□ -1.42
USP28-213ENST00000544967 COL23A1Q86Y22 540 aaPredicted RBP6.21□□□□□ -1.42
USP28-213ENST00000544967 TTC5Q8N0Z6 440 aa6.21□□□□□ -1.42
USP28-213ENST00000544967 THUMPD2Q9BTF0 503 aaKnown RBP6.21□□□□□ -1.42
USP28-213ENST00000544967 SMC4Q9NTJ3 1288 aa6.21□□□□□ -1.42
USP28-213ENST00000544967 STK32BQ9NY57 414 aa6.21□□□□□ -1.42
USP28-213ENST00000544967 TSPYL4Q9UJ04 414 aa6.21□□□□□ -1.42
USP28-213ENST00000544967 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.21□□□□□ -1.42
USP28-213ENST00000544967 ABCC4O15439 1325 aa6.21□□□□□ -1.42
USP28-213ENST00000544967 ELP1O95163 1332 aa6.21□□□□□ -1.42
USP28-213ENST00000544967 ANKRD62A6NC57 917 aa6.21□□□□□ -1.42
USP28-213ENST00000544967 GYS1P13807 737 aa6.21□□□□□ -1.42
USP28-213ENST00000544967 TXLNBQ8N3L3 684 aa6.21□□□□□ -1.42
USP28-213ENST00000544967 KCNV2Q8TDN2 545 aa6.21□□□□□ -1.42
USP28-213ENST00000544967 ERO1AQ96HE7 468 aa6.21□□□□□ -1.42
USP28-213ENST00000544967 MAP3K15Q6ZN16 1313 aa6.21□□□□□ -1.42
USP28-213ENST00000544967 CARMIL3Q8ND23 1372 aa6.21□□□□□ -1.42
USP28-213ENST00000544967 PEX14O75381 377 aa6.2□□□□□ -1.42
USP28-213ENST00000544967 FOSBP53539 338 aa6.2□□□□□ -1.42
USP28-213ENST00000544967 UBE2HP62256 183 aa6.2□□□□□ -1.42
USP28-213ENST00000544967 SLC39A6Q13433 755 aa6.2□□□□□ -1.42
USP28-213ENST00000544967 ITPRIPQ8IWB1 547 aa6.2□□□□□ -1.42
USP28-213ENST00000544967 ZNF34Q8IZ26 560 aa6.2□□□□□ -1.42
USP28-213ENST00000544967 IQUBQ8NA54 791 aa6.2□□□□□ -1.42
USP28-213ENST00000544967 C8orf58Q8NAV2 365 aa6.2□□□□□ -1.42
USP28-213ENST00000544967 ZNF622Q969S3 477 aaKnown RBP eCLIP6.2□□□□□ -1.426e-7■■■■■ 27
USP28-213ENST00000544967 OSBPL3Q9H4L5 887 aa6.2□□□□□ -1.42
USP28-213ENST00000544967 AK9Q5TCS8 1911 aa6.2□□□□□ -1.42
USP28-213ENST00000544967 BMS1Q14692 1282 aaKnown RBP6.2□□□□□ -1.42
USP28-213ENST00000544967 RINLQ6ZS11 566 aa6.2□□□□□ -1.42
USP28-213ENST00000544967 TMEM57Q8N5G2 664 aa6.2□□□□□ -1.42
USP28-213ENST00000544967 HYPKQ9NX55 129 aa6.2□□□□□ -1.42
USP28-213ENST00000544967 PSD3Q9NYI0 1048 aa6.2□□□□□ -1.42
USP28-213ENST00000544967 ZBTB1Q9Y2K1 713 aa6.2□□□□□ -1.42
USP28-213ENST00000544967 ATP6V1DQ9Y5K8 247 aa6.2□□□□□ -1.42
USP28-213ENST00000544967 USP16Q9Y5T5 823 aa6.2□□□□□ -1.42
USP28-213ENST00000544967 PTPRCP08575 1304 aa6.2□□□□□ -1.42
USP28-213ENST00000544967 ZBTB7BO15156 539 aaPredicted RBP6.2□□□□□ -1.42
USP28-213ENST00000544967 CAPN2P17655 700 aa6.2□□□□□ -1.42
USP28-213ENST00000544967 KCNJ6P48051 423 aa6.2□□□□□ -1.42
USP28-213ENST00000544967 RBM26Q5T8P6 1007 aaKnown RBP6.2□□□□□ -1.42
USP28-213ENST00000544967 SSH1Q8WYL5 1049 aa6.2□□□□□ -1.42
USP28-213ENST00000544967 ISCA1Q9BUE6 129 aa6.2□□□□□ -1.42
USP28-213ENST00000544967 DBF4Q9UBU7 674 aaPredicted RBP6.2□□□□□ -1.42
USP28-213ENST00000544967 FEZ2Q9UHY8 353 aaPredicted RBP6.2□□□□□ -1.42
USP28-213ENST00000544967 TNNQ9UQP3 1299 aa6.2□□□□□ -1.42
USP28-213ENST00000544967 ATF5Q9Y2D1 282 aaPredicted RBP6.2□□□□□ -1.42
USP28-213ENST00000544967 ADAMTSL1Q8N6G6 1762 aa6.19□□□□□ -1.42
USP28-213ENST00000544967 PRAMEF22A3QJZ6 481 aa6.19□□□□□ -1.42
USP28-213ENST00000544967 SLC10A5Q5PT55 438 aa6.19□□□□□ -1.42
USP28-213ENST00000544967 ARHGEF1Q92888 912 aaKnown RBP6.19□□□□□ -1.42
USP28-213ENST00000544967 KCNF1Q9H3M0 494 aa6.19□□□□□ -1.42
USP28-213ENST00000544967 RRP7AQ9Y3A4 280 aaKnown RBP6.19□□□□□ -1.42
USP28-213ENST00000544967 ARIH1Q9Y4X5 557 aaPredicted RBP6.19□□□□□ -1.42
USP28-213ENST00000544967 TAF1P21675 1872 aa6.19□□□□□ -1.42
USP28-213ENST00000544967 A0A0G2JS52 829 aa6.19□□□□□ -1.42
USP28-213ENST00000544967 SPDYE4A6NLX3 237 aa6.19□□□□□ -1.42
USP28-213ENST00000544967 POLRMTO00411 1230 aaKnown RBP6.19□□□□□ -1.42
USP28-213ENST00000544967 RAB11FIP3O75154 756 aa6.19□□□□□ -1.42
USP28-213ENST00000544967 GORABQ5T7V8 394 aa6.19□□□□□ -1.42
USP28-213ENST00000544967 CCDC112Q8NEF3 446 aa6.19□□□□□ -1.42
USP28-213ENST00000544967 AK7Q96M32 723 aa6.19□□□□□ -1.42
USP28-213ENST00000544967 LNPKQ9C0E8 428 aa6.19□□□□□ -1.42
USP28-213ENST00000544967 CDHR2Q9BYE9 1310 aa6.19□□□□□ -1.42
USP28-213ENST00000544967 TEX35Q5T0J7 233 aa6.19□□□□□ -1.42
USP28-213ENST00000544967 RPAINQ86UA6 219 aa6.19□□□□□ -1.42
USP28-213ENST00000544967 PLEKHM2Q8IWE5 1019 aa6.19□□□□□ -1.42
USP28-213ENST00000544967 MRPL50Q8N5N7 158 aaKnown RBP6.19□□□□□ -1.42
USP28-213ENST00000544967 MSL3Q8N5Y2 521 aaKnown RBP6.19□□□□□ -1.42
USP28-213ENST00000544967 PLBD2Q8NHP8 589 aa6.19□□□□□ -1.42
USP28-213ENST00000544967 DCTPP1Q9H773 170 aa6.19□□□□□ -1.42
USP28-213ENST00000544967 RTCBQ9Y3I0 505 aaKnown RBP6.19□□□□□ -1.42
USP28-213ENST00000544967 SH3BP1Q9Y3L3 701 aa6.19□□□□□ -1.42
USP28-213ENST00000544967 PPFIA4O75335 1185 aa6.18□□□□□ -1.42
USP28-213ENST00000544967 CRY2Q49AN0 593 aa6.18□□□□□ -1.42
USP28-213ENST00000544967 TSPYL6Q8N831 410 aa6.18□□□□□ -1.42
USP28-213ENST00000544967 PLA2G12BQ9BX93 195 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms