RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 NAA16Q6N069 864 aaPredicted RBP14.87□□□□□ -0.03
SFSWAP-209ENST00000540469 PCDHA7Q9UN72 937 aa14.87□□□□□ -0.03
SFSWAP-209ENST00000540469 PHLPP2Q6ZVD8 1323 aa14.87□□□□□ -0.03
SFSWAP-209ENST00000540469 TAF5LO75529 589 aa14.87□□□□□ -0.03
SFSWAP-209ENST00000540469 SYNE3Q6ZMZ3 975 aa14.87□□□□□ -0.03
SFSWAP-209ENST00000540469 KLHDC4Q8TBB5 520 aa14.87□□□□□ -0.03
SFSWAP-209ENST00000540469 MYO1CO00159 1063 aa14.86□□□□□ -0.03
SFSWAP-209ENST00000540469 TADA3O75528 432 aa14.86□□□□□ -0.03
SFSWAP-209ENST00000540469 ZRANB2O95218 330 aaKnown RBP eCLIP14.86□□□□□ -0.03
SFSWAP-209ENST00000540469 HSP90AA4PQ58FG1 418 aa14.86□□□□□ -0.03
SFSWAP-209ENST00000540469 MCM6Q14566 821 aa14.86□□□□□ -0.03
SFSWAP-209ENST00000540469 U3KPZ7 1027 aaPredicted RBP14.86□□□□□ -0.03
SFSWAP-209ENST00000540469 CBFA2T2O43439 604 aa14.86□□□□□ -0.03
SFSWAP-209ENST00000540469 PPP2R3AQ06190 1150 aa14.86□□□□□ -0.03
SFSWAP-209ENST00000540469 TOMM22Q9NS69 142 aa14.86□□□□□ -0.03
SFSWAP-209ENST00000540469 ATP1A3P13637 1013 aa14.85□□□□□ -0.03
SFSWAP-209ENST00000540469 OTUD7BQ6GQQ9 843 aa14.85□□□□□ -0.03
SFSWAP-209ENST00000540469 CC2D1AQ6P1N0 951 aaPredicted RBP14.85□□□□□ -0.03
SFSWAP-209ENST00000540469 CHST3Q7LGC8 479 aa14.85□□□□□ -0.03
SFSWAP-209ENST00000540469 NSUN7Q8NE18 718 aaKnown RBP14.85□□□□□ -0.03
SFSWAP-209ENST00000540469 ADCY9O60503 1353 aa14.85□□□□□ -0.03
SFSWAP-209ENST00000540469 PXDNLA1KZ92 1463 aa14.85□□□□□ -0.03
SFSWAP-209ENST00000540469 PREX1Q8TCU6 1659 aa14.85□□□□□ -0.03
SFSWAP-209ENST00000540469 NOM1Q5C9Z4 860 aaKnown RBP14.85□□□□□ -0.03
SFSWAP-209ENST00000540469 ENGASEQ8NFI3 743 aa14.85□□□□□ -0.03
SFSWAP-209ENST00000540469 IGSF1Q8N6C5 1336 aa14.84□□□□□ -0.03
SFSWAP-209ENST00000540469 SASH1O94885 1247 aa14.84□□□□□ -0.03
SFSWAP-209ENST00000540469 KCND1Q9NSA2 647 aa14.84□□□□□ -0.03
SFSWAP-209ENST00000540469 VPS18Q9P253 973 aa14.84□□□□□ -0.03
SFSWAP-209ENST00000540469 BICC1Q9H694 974 aaKnown RBP14.84□□□□□ -0.03
SFSWAP-209ENST00000540469 RIMS1Q86UR5 1692 aaKnown RBP14.84□□□□□ -0.03
SFSWAP-209ENST00000540469 SBNO1A3KN83 1393 aa14.84□□□□□ -0.03
SFSWAP-209ENST00000540469 TBC1D8O95759 1140 aa14.84□□□□□ -0.03
SFSWAP-209ENST00000540469 CYP21A2P08686 494 aa14.84□□□□□ -0.03
SFSWAP-209ENST00000540469 FMR1NBQ8N0W7 255 aaPredicted RBP14.84□□□□□ -0.03
SFSWAP-209ENST00000540469 GPR161Q8N6U8 529 aaKnown RBP14.84□□□□□ -0.03
SFSWAP-209ENST00000540469 LLPHQ9BRT6 129 aaKnown RBP14.84□□□□□ -0.03
SFSWAP-209ENST00000540469 KCNQ3O43525 872 aa14.83□□□□□ -0.03
SFSWAP-209ENST00000540469 SASH3O75995 380 aa14.83□□□□□ -0.03
SFSWAP-209ENST00000540469 ADD1P35611 737 aaKnown RBP14.83□□□□□ -0.03
SFSWAP-209ENST00000540469 ADALQ6DHV7 355 aa14.83□□□□□ -0.03
SFSWAP-209ENST00000540469 RGS22Q8NE09 1264 aa14.83□□□□□ -0.03
SFSWAP-209ENST00000540469 ALDH8A1Q9H2A2 487 aaPredicted RBP14.83□□□□□ -0.03
SFSWAP-209ENST00000540469 ATP8B1O43520 1251 aa14.83□□□□□ -0.04
SFSWAP-209ENST00000540469 NLRP12P59046 1061 aa14.83□□□□□ -0.04
SFSWAP-209ENST00000540469 MUM1L1Q5H9M0 696 aa14.83□□□□□ -0.04
SFSWAP-209ENST00000540469 OLFM4Q6UX06 510 aa14.83□□□□□ -0.04
SFSWAP-209ENST00000540469 DDX46Q7L014 1031 aaKnown RBP14.83□□□□□ -0.04
SFSWAP-209ENST00000540469 DBF4Q9UBU7 674 aaPredicted RBP14.83□□□□□ -0.04
SFSWAP-209ENST00000540469 BTBD11A6QL63 1104 aa14.83□□□□□ -0.04
SFSWAP-209ENST00000540469 ATL3Q6DD88 541 aa14.83□□□□□ -0.04
SFSWAP-209ENST00000540469 CCDC12Q8WUD4 166 aaPredicted RBP14.83□□□□□ -0.04
SFSWAP-209ENST00000540469 SUCLG2Q96I99 432 aa14.83□□□□□ -0.04
SFSWAP-209ENST00000540469 ADAM21Q9UKJ8 722 aa14.83□□□□□ -0.04
SFSWAP-209ENST00000540469 NPHP4O75161 1426 aaPredicted RBP14.83□□□□□ -0.04
SFSWAP-209ENST00000540469 SPTLC2O15270 562 aa14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 PFKFB2O60825 505 aa14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 ZNF202O95125 648 aa14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 HDGFP51858 240 aaKnown RBP14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 KARSQ15046 597 aaKnown RBP14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 GOLGA5Q8TBA6 731 aa14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 GOLGA1Q92805 767 aa14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 PARD6BQ9BYG5 372 aa14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 CPLX1O14810 134 aa14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 EIF4A1P60842 406 aaKnown RBP14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 SKIDA1Q1XH10 827 aa14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 DHX32Q7L7V1 743 aaKnown RBP14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 KCNG4Q8TDN1 519 aa14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 C8orf76Q96K31 380 aa14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 LCMT1Q9UIC8 334 aa14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 RRP15Q9Y3B9 282 aaKnown RBP14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 PARP3Q9Y6F1 533 aa14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 GRM8O00222 908 aa14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 CHGBP05060 677 aa14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 HMGB1P09429 215 aaKnown RBP14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 GTF2A1P52655 376 aaPredicted RBP14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 MPHOSPH8Q99549 860 aa14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 PPP2R2CQ9Y2T4 447 aa14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 CLIC4Q9Y696 253 aa14.82□□□□□ -0.04
SFSWAP-209ENST00000540469 XRN1Q8IZH2 1706 aaKnown RBP14.81□□□□□ -0.04
SFSWAP-209ENST00000540469 ALDH1L1O75891 902 aa14.81□□□□□ -0.04
SFSWAP-209ENST00000540469 MARCKSP29966 332 aaPredicted RBP14.81□□□□□ -0.04
SFSWAP-209ENST00000540469 MTX1Q13505 466 aa14.81□□□□□ -0.04
SFSWAP-209ENST00000540469 HSP90B2PQ58FF3 399 aa14.81□□□□□ -0.04
SFSWAP-209ENST00000540469 RAB11FIP4Q86YS3 637 aa14.81□□□□□ -0.04
SFSWAP-209ENST00000540469 LGR6Q9HBX8 967 aa14.81□□□□□ -0.04
SFSWAP-209ENST00000540469 KCNJ6P48051 423 aa14.81□□□□□ -0.04
SFSWAP-209ENST00000540469 SMARCC2Q8TAQ2 1214 aa14.81□□□□□ -0.04
SFSWAP-209ENST00000540469 MED23Q9ULK4 1368 aa14.81□□□□□ -0.04
SFSWAP-209ENST00000540469 OVOS2A0A0J9YW53 1432 aa14.81□□□□□ -0.04
SFSWAP-209ENST00000540469 OVOS2Q6IE36 1432 aa14.81□□□□□ -0.04
SFSWAP-209ENST00000540469 MCMDC2Q4G0Z9 681 aa14.8□□□□□ -0.04
SFSWAP-209ENST00000540469 RIC3Q7Z5B4 369 aa14.8□□□□□ -0.04
SFSWAP-209ENST00000540469 CCDC102AQ96A19 550 aa14.8□□□□□ -0.04
SFSWAP-209ENST00000540469 PUF60Q9UHX1 559 aaKnown RBP14.8□□□□□ -0.04
SFSWAP-209ENST00000540469 LOC102724159A0A0B4J2E5 919 aa14.8□□□□□ -0.04
SFSWAP-209ENST00000540469 MYL5Q02045 173 aa14.8□□□□□ -0.04
SFSWAP-209ENST00000540469 PWP2Q15269 919 aaKnown RBP14.8□□□□□ -0.04
SFSWAP-209ENST00000540469 LONRF2Q1L5Z9 754 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms